miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6912 5' -49.6 NC_001875.2 + 115462 0.66 0.996193
Target:  5'- ----aCCGCGuuGAGCU-AGC-GGGCGCg -3'
miRNA:   3'- caaacGGCGC--UUUGAuUUGaCCCGCG- -5'
6912 5' -49.6 NC_001875.2 + 120724 0.66 0.996193
Target:  5'- ---aGCCGCGAGuuugauUUGAGCgUGGcCGCa -3'
miRNA:   3'- caaaCGGCGCUUu-----GAUUUG-ACCcGCG- -5'
6912 5' -49.6 NC_001875.2 + 122226 0.66 0.996193
Target:  5'- --gUGCaCGUGAAGCcgcugGAGgaGGGCGg -3'
miRNA:   3'- caaACG-GCGCUUUGa----UUUgaCCCGCg -5'
6912 5' -49.6 NC_001875.2 + 69757 0.66 0.996193
Target:  5'- --cUGCUGCGAAccAUUGAAUUuggcgacGGCGCg -3'
miRNA:   3'- caaACGGCGCUU--UGAUUUGAc------CCGCG- -5'
6912 5' -49.6 NC_001875.2 + 69505 0.66 0.99613
Target:  5'- ---cGCCGCGcccACUuaAAACUGGcgaacgaacgcuuGCGCa -3'
miRNA:   3'- caaaCGGCGCuu-UGA--UUUGACC-------------CGCG- -5'
6912 5' -49.6 NC_001875.2 + 31186 0.66 0.995524
Target:  5'- ---cGCCGCuGGAAUUGG--UGGGgGCu -3'
miRNA:   3'- caaaCGGCG-CUUUGAUUugACCCgCG- -5'
6912 5' -49.6 NC_001875.2 + 128947 0.66 0.995524
Target:  5'- ---gGCacgaGCGGcuaaGGCgUGAGCUGGGCGa -3'
miRNA:   3'- caaaCGg---CGCU----UUG-AUUUGACCCGCg -5'
6912 5' -49.6 NC_001875.2 + 39254 0.66 0.995524
Target:  5'- --aUGCUGgaGAAACUGcgcGACgcgGGGCGg -3'
miRNA:   3'- caaACGGCg-CUUUGAU---UUGa--CCCGCg -5'
6912 5' -49.6 NC_001875.2 + 97391 0.66 0.995524
Target:  5'- uUUUGCUGCGcgcgcauGGCguugaUGGGCGUg -3'
miRNA:   3'- cAAACGGCGCu------UUGauuugACCCGCG- -5'
6912 5' -49.6 NC_001875.2 + 13830 0.66 0.995524
Target:  5'- ---gGUCGCGguACcgGAAgaGGGCGUu -3'
miRNA:   3'- caaaCGGCGCuuUGa-UUUgaCCCGCG- -5'
6912 5' -49.6 NC_001875.2 + 73616 0.66 0.995524
Target:  5'- -gUUGCgGCGGcGGCUGcggcGGCUGcGGCGg -3'
miRNA:   3'- caAACGgCGCU-UUGAU----UUGAC-CCGCg -5'
6912 5' -49.6 NC_001875.2 + 88122 0.66 0.995078
Target:  5'- cUUUGCgGgcaCGguGCUGAGCggcgccaaaauugugUGGGCGCa -3'
miRNA:   3'- cAAACGgC---GCuuUGAUUUG---------------ACCCGCG- -5'
6912 5' -49.6 NC_001875.2 + 73677 0.66 0.994762
Target:  5'- --cUGCUGCGGcGGCU--GCUGcGGCGg -3'
miRNA:   3'- caaACGGCGCU-UUGAuuUGAC-CCGCg -5'
6912 5' -49.6 NC_001875.2 + 73647 0.66 0.994762
Target:  5'- --cUGCUGCGGcGGCUGcggcGGCUGcGGCuGCu -3'
miRNA:   3'- caaACGGCGCU-UUGAU----UUGAC-CCG-CG- -5'
6912 5' -49.6 NC_001875.2 + 29028 0.66 0.994762
Target:  5'- aUUUGCgGCGGcgacgGGCUAAACgacGCGCu -3'
miRNA:   3'- cAAACGgCGCU-----UUGAUUUGaccCGCG- -5'
6912 5' -49.6 NC_001875.2 + 103436 0.66 0.994762
Target:  5'- --aUGCUGUGuuuGCUGGuCUGcGGCGUc -3'
miRNA:   3'- caaACGGCGCuu-UGAUUuGAC-CCGCG- -5'
6912 5' -49.6 NC_001875.2 + 119903 0.66 0.994762
Target:  5'- ---cGCUGCGcGACcucaacccCUGGGUGCa -3'
miRNA:   3'- caaaCGGCGCuUUGauuu----GACCCGCG- -5'
6912 5' -49.6 NC_001875.2 + 109854 0.66 0.994762
Target:  5'- aUUUGCUGCGcgcguuugccAAGCUGGcGCU-GGCGCc -3'
miRNA:   3'- cAAACGGCGC----------UUUGAUU-UGAcCCGCG- -5'
6912 5' -49.6 NC_001875.2 + 29270 0.66 0.994762
Target:  5'- ---gGCCGCcGAccGCgccGGCgGGGCGCg -3'
miRNA:   3'- caaaCGGCGcUU--UGau-UUGaCCCGCG- -5'
6912 5' -49.6 NC_001875.2 + 67140 0.66 0.993897
Target:  5'- ---cGCCGUGuuGCUGcGGCUGucuGCGCg -3'
miRNA:   3'- caaaCGGCGCuuUGAU-UUGACc--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.