miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 3' -54.6 NC_001875.2 + 40430 0.66 0.945122
Target:  5'- gGGGCUgACGcGCGCCA-UCGAgaacgugggcagcCCCGa -3'
miRNA:   3'- gCUCGA-UGC-CGCGGUuAGCUaa-----------GGGC- -5'
6915 3' -54.6 NC_001875.2 + 40425 0.66 0.943311
Target:  5'- gCGAGCUGCGGC-CCAucaauugCGAgcugCCGc -3'
miRNA:   3'- -GCUCGAUGCCGcGGUua-----GCUaag-GGC- -5'
6915 3' -54.6 NC_001875.2 + 90781 0.66 0.943311
Target:  5'- uGAGCcGCuGCGCCucgaacgacaGGUCGuugguGUUCCCGa -3'
miRNA:   3'- gCUCGaUGcCGCGG----------UUAGC-----UAAGGGC- -5'
6915 3' -54.6 NC_001875.2 + 113633 0.66 0.938613
Target:  5'- aGAGCggcgACGGCGCCGcguaaucaaaGUCGcgcagCuCCGa -3'
miRNA:   3'- gCUCGa---UGCCGCGGU----------UAGCuaa--G-GGC- -5'
6915 3' -54.6 NC_001875.2 + 33318 0.66 0.923061
Target:  5'- gCGAGCgcgugGCGuuGCCAaggGUCGucgCCCGg -3'
miRNA:   3'- -GCUCGa----UGCcgCGGU---UAGCuaaGGGC- -5'
6915 3' -54.6 NC_001875.2 + 108253 0.67 0.917388
Target:  5'- aCGGGCUGCuG-GCCAAgcacgCGGUgCCCGc -3'
miRNA:   3'- -GCUCGAUGcCgCGGUUa----GCUAaGGGC- -5'
6915 3' -54.6 NC_001875.2 + 48432 0.67 0.911472
Target:  5'- gCGcAGUuuUGCGGCGCCAuggCGAccaaCCCGc -3'
miRNA:   3'- -GC-UCG--AUGCCGCGGUua-GCUaa--GGGC- -5'
6915 3' -54.6 NC_001875.2 + 90031 0.68 0.878317
Target:  5'- -uGGCcGCGGCGCCGGcgCGcgUgCCGg -3'
miRNA:   3'- gcUCGaUGCCGCGGUUa-GCuaAgGGC- -5'
6915 3' -54.6 NC_001875.2 + 70194 0.68 0.870996
Target:  5'- cCGGGCggcgACGGCGaCCAcUgGGcgCCCGa -3'
miRNA:   3'- -GCUCGa---UGCCGC-GGUuAgCUaaGGGC- -5'
6915 3' -54.6 NC_001875.2 + 102005 0.68 0.863456
Target:  5'- cCGGGC-ACGGgGCCG-UCGGccgugCCCGa -3'
miRNA:   3'- -GCUCGaUGCCgCGGUuAGCUaa---GGGC- -5'
6915 3' -54.6 NC_001875.2 + 77092 0.68 0.855703
Target:  5'- --cGCUgGCGGUGCCGG-CGGUgcgCCCGc -3'
miRNA:   3'- gcuCGA-UGCCGCGGUUaGCUAa--GGGC- -5'
6915 3' -54.6 NC_001875.2 + 62350 0.68 0.855703
Target:  5'- uGGGC-GCGGCGCCAGuUUGggUCgCGc -3'
miRNA:   3'- gCUCGaUGCCGCGGUU-AGCuaAGgGC- -5'
6915 3' -54.6 NC_001875.2 + 48830 0.69 0.813977
Target:  5'- gCGcGCUACGGCGCCGcuUCaag-CCCGc -3'
miRNA:   3'- -GCuCGAUGCCGCGGUu-AGcuaaGGGC- -5'
6915 3' -54.6 NC_001875.2 + 84315 0.69 0.805094
Target:  5'- -uAGUaGCGGCGCCug-CGGUaCCCGg -3'
miRNA:   3'- gcUCGaUGCCGCGGuuaGCUAaGGGC- -5'
6915 3' -54.6 NC_001875.2 + 129759 0.7 0.768047
Target:  5'- uGAGCaGCGuacuGCGCgGGUCGGUUgCCGg -3'
miRNA:   3'- gCUCGaUGC----CGCGgUUAGCUAAgGGC- -5'
6915 3' -54.6 NC_001875.2 + 49648 0.71 0.738931
Target:  5'- aCGAGCggccgcCGGCGCCcAUCGAgcacgaCCUGg -3'
miRNA:   3'- -GCUCGau----GCCGCGGuUAGCUaa----GGGC- -5'
6915 3' -54.6 NC_001875.2 + 42295 0.71 0.737944
Target:  5'- uGGGCacccGCGGCGCCAaguacagAUCGAgcgcgCCCa -3'
miRNA:   3'- gCUCGa---UGCCGCGGU-------UAGCUaa---GGGc -5'
6915 3' -54.6 NC_001875.2 + 91955 0.71 0.729022
Target:  5'- cCGGGCUAUGGUGCagcgCGucgCCCGg -3'
miRNA:   3'- -GCUCGAUGCCGCGguuaGCuaaGGGC- -5'
6915 3' -54.6 NC_001875.2 + 120739 0.71 0.708958
Target:  5'- -cAGCUGCGGCGCCGAgaCGGggCCg- -3'
miRNA:   3'- gcUCGAUGCCGCGGUUa-GCUaaGGgc -5'
6915 3' -54.6 NC_001875.2 + 61619 0.72 0.678386
Target:  5'- uCGGGCUgugucgGCGGCGCC--UCGGgcgCCCa -3'
miRNA:   3'- -GCUCGA------UGCCGCGGuuAGCUaa-GGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.