miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 44643 0.66 0.928811
Target:  5'- aCCUGUGCGCGgucGCGCgucaagaucuCGCCAGC-Ca -3'
miRNA:   3'- -GGGCGCGUGUaauCGCG----------GUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 121989 0.66 0.928811
Target:  5'- -gCGgGCACGUU-GC-CCGCCAGCg- -3'
miRNA:   3'- ggGCgCGUGUAAuCGcGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 21566 0.66 0.928811
Target:  5'- gCCGCGCgAUAUUAGCGUggaCGCguACg- -3'
miRNA:   3'- gGGCGCG-UGUAAUCGCG---GUGguUGag -5'
6915 5' -54.8 NC_001875.2 + 92084 0.66 0.928811
Target:  5'- uCCagGCGCGCGUggGGUugGCCACCuuUUCc -3'
miRNA:   3'- -GGg-CGCGUGUAa-UCG--CGGUGGuuGAG- -5'
6915 5' -54.8 NC_001875.2 + 23812 0.66 0.928811
Target:  5'- cUCCGCG-GCGUcgGGCGC-GCCGugUCu -3'
miRNA:   3'- -GGGCGCgUGUAa-UCGCGgUGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 54361 0.66 0.928811
Target:  5'- gCCCG-GCGCGUUgggcgAGCGCaCGCCuuGgUCg -3'
miRNA:   3'- -GGGCgCGUGUAA-----UCGCG-GUGGu-UgAG- -5'
6915 5' -54.8 NC_001875.2 + 43028 0.66 0.928811
Target:  5'- gCCGCGCGCcgcGGCG-CGCgGGCUa -3'
miRNA:   3'- gGGCGCGUGuaaUCGCgGUGgUUGAg -5'
6915 5' -54.8 NC_001875.2 + 129390 0.66 0.928811
Target:  5'- aCCCGCGCGCaAUUAcGUGCaGCUAAa-- -3'
miRNA:   3'- -GGGCGCGUG-UAAU-CGCGgUGGUUgag -5'
6915 5' -54.8 NC_001875.2 + 129167 0.66 0.928811
Target:  5'- --gGCGcCGCAguugccccaGGCGCCGCCGGCg- -3'
miRNA:   3'- gggCGC-GUGUaa-------UCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 89050 0.66 0.928811
Target:  5'- gCCCGUGCGCGggcuggucaaaaUUGuGCGCacgGCCGACcCg -3'
miRNA:   3'- -GGGCGCGUGU------------AAU-CGCGg--UGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 13910 0.66 0.928811
Target:  5'- gCgGCGCGCAc--GCcgGCCugCAGCUUg -3'
miRNA:   3'- gGgCGCGUGUaauCG--CGGugGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 42960 0.66 0.928811
Target:  5'- gCCCGCGC-----AGCGC-GCCAACa- -3'
miRNA:   3'- -GGGCGCGuguaaUCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 126337 0.66 0.928276
Target:  5'- aCUGCGCGCGU--GCGCCggucgugcugugcACCGAgUUCa -3'
miRNA:   3'- gGGCGCGUGUAauCGCGG-------------UGGUU-GAG- -5'
6915 5' -54.8 NC_001875.2 + 45470 0.66 0.925564
Target:  5'- gCCCGCagccGCGCGUcUAGCGCggugccaaacaccacCACCAcacACUUg -3'
miRNA:   3'- -GGGCG----CGUGUA-AUCGCG---------------GUGGU---UGAG- -5'
6915 5' -54.8 NC_001875.2 + 121701 0.66 0.92335
Target:  5'- gCCGCGCuuGCGgaacacGCccgaacugGCCACCAGCUUc -3'
miRNA:   3'- gGGCGCG--UGUaau---CG--------CGGUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 119859 0.66 0.92335
Target:  5'- aCCCGCGCcCAacgcCGUCGCCAguGCUUc -3'
miRNA:   3'- -GGGCGCGuGUaaucGCGGUGGU--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 99382 0.66 0.92335
Target:  5'- gCCaaaGCGcCGCAccGGCGgCGCCAGCg- -3'
miRNA:   3'- -GGg--CGC-GUGUaaUCGCgGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 76329 0.66 0.92335
Target:  5'- gCCGCcaucgaGCAgGUgcuGCGCCACCAGg-- -3'
miRNA:   3'- gGGCG------CGUgUAau-CGCGGUGGUUgag -5'
6915 5' -54.8 NC_001875.2 + 69481 0.66 0.92335
Target:  5'- uCCCugGCGCGCGacccaaacUGGCGCCgcGCCcACUUa -3'
miRNA:   3'- -GGG--CGCGUGUa-------AUCGCGG--UGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 107832 0.66 0.92335
Target:  5'- gCCCGCGCcCGgu-GCGCCuugCGACg- -3'
miRNA:   3'- -GGGCGCGuGUaauCGCGGug-GUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.