miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 89300 0.66 0.899032
Target:  5'- gUgGC-CGCA-UGGCGCCGCCAccaugcgcuucgGCUCg -3'
miRNA:   3'- gGgCGcGUGUaAUCGCGGUGGU------------UGAG- -5'
6915 5' -54.8 NC_001875.2 + 85792 0.66 0.914095
Target:  5'- uUCUGCGCcguucauguugugaaGCAUUuccGCGgCGCCAGCUg -3'
miRNA:   3'- -GGGCGCG---------------UGUAAu--CGCgGUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 45470 0.66 0.925564
Target:  5'- gCCCGCagccGCGCGUcUAGCGCggugccaaacaccacCACCAcacACUUg -3'
miRNA:   3'- -GGGCG----CGUGUA-AUCGCG---------------GUGGU---UGAG- -5'
6915 5' -54.8 NC_001875.2 + 11085 0.66 0.911683
Target:  5'- -gCGCGCGCccUGGacacgGCCGCCGuCUCg -3'
miRNA:   3'- ggGCGCGUGuaAUCg----CGGUGGUuGAG- -5'
6915 5' -54.8 NC_001875.2 + 43028 0.66 0.928811
Target:  5'- gCCGCGCGCcgcGGCG-CGCgGGCUa -3'
miRNA:   3'- gGGCGCGUGuaaUCGCgGUGgUUGAg -5'
6915 5' -54.8 NC_001875.2 + 17345 0.66 0.91764
Target:  5'- gCCGCGCgaccGCGUcagAGUGCUGCCGcacauCUCu -3'
miRNA:   3'- gGGCGCG----UGUAa--UCGCGGUGGUu----GAG- -5'
6915 5' -54.8 NC_001875.2 + 54004 0.66 0.911683
Target:  5'- gUCGCGCACGgccUUGGCGgCGCgCGcguaccggcACUCg -3'
miRNA:   3'- gGGCGCGUGU---AAUCGCgGUG-GU---------UGAG- -5'
6915 5' -54.8 NC_001875.2 + 129167 0.66 0.928811
Target:  5'- --gGCGcCGCAguugccccaGGCGCCGCCGGCg- -3'
miRNA:   3'- gggCGC-GUGUaa-------UCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 107832 0.66 0.92335
Target:  5'- gCCCGCGCcCGgu-GCGCCuugCGACg- -3'
miRNA:   3'- -GGGCGCGuGUaauCGCGGug-GUUGag -5'
6915 5' -54.8 NC_001875.2 + 1060 0.66 0.91764
Target:  5'- --gGCGCaACGUUGGCGaCCGCgCGgucagGCUCa -3'
miRNA:   3'- gggCGCG-UGUAAUCGC-GGUG-GU-----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 97887 0.66 0.911683
Target:  5'- gCCGCacggGCACGUUgcgGGCGUCggcGCCGACg- -3'
miRNA:   3'- gGGCG----CGUGUAA---UCGCGG---UGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 61610 0.66 0.911683
Target:  5'- aCCGCGCGCuggcUUGGCGagaacugaUCGCUAACg- -3'
miRNA:   3'- gGGCGCGUGu---AAUCGC--------GGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 121989 0.66 0.928811
Target:  5'- -gCGgGCACGUU-GC-CCGCCAGCg- -3'
miRNA:   3'- ggGCgCGUGUAAuCGcGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 39809 0.66 0.899032
Target:  5'- gCCCGUGgACGUcGGCG--GCCGACUUu -3'
miRNA:   3'- -GGGCGCgUGUAaUCGCggUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 21566 0.66 0.928811
Target:  5'- gCCGCGCgAUAUUAGCGUggaCGCguACg- -3'
miRNA:   3'- gGGCGCG-UGUAAUCGCG---GUGguUGag -5'
6915 5' -54.8 NC_001875.2 + 38380 0.66 0.899032
Target:  5'- aCCCgGCGCugAcaaaguGCGCgGCCAugUUu -3'
miRNA:   3'- -GGG-CGCGugUaau---CGCGgUGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 99382 0.66 0.92335
Target:  5'- gCCaaaGCGcCGCAccGGCGgCGCCAGCg- -3'
miRNA:   3'- -GGg--CGC-GUGUaaUCGCgGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 15217 0.66 0.899032
Target:  5'- gCUGCGCGaguacaAGCGCC-CCAACg- -3'
miRNA:   3'- gGGCGCGUguaa--UCGCGGuGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 42857 0.66 0.905479
Target:  5'- uCCgGCGCGCcgcaGGCGCaggucCGCCAGCg- -3'
miRNA:   3'- -GGgCGCGUGuaa-UCGCG-----GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 23812 0.66 0.928811
Target:  5'- cUCCGCG-GCGUcgGGCGC-GCCGugUCu -3'
miRNA:   3'- -GGGCGCgUGUAa-UCGCGgUGGUugAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.