miRNA display CGI


Results 101 - 120 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 77833 0.67 0.866333
Target:  5'- aCgCGCGCGCcgcaaggccguGCGCgACCAGCUg -3'
miRNA:   3'- -GgGCGCGUGuaau-------CGCGgUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 36807 0.67 0.885418
Target:  5'- aCgGUGCGCGUUAcGCGCCG-CGGCa- -3'
miRNA:   3'- gGgCGCGUGUAAU-CGCGGUgGUUGag -5'
6915 5' -54.8 NC_001875.2 + 47449 0.67 0.892344
Target:  5'- aUCCGUGUACAUcggugaaauUGGUGCCGCaCAggcccAUUCg -3'
miRNA:   3'- -GGGCGCGUGUA---------AUCGCGGUG-GU-----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 47387 0.67 0.892344
Target:  5'- -aCGCGCAUcaUGGUcuaccGCCGCCGccGCUCc -3'
miRNA:   3'- ggGCGCGUGuaAUCG-----CGGUGGU--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 42571 0.67 0.892344
Target:  5'- gCCGCGC-CAggucGGCGCaCGCgcgcguCAGCUCg -3'
miRNA:   3'- gGGCGCGuGUaa--UCGCG-GUG------GUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 98044 0.67 0.87826
Target:  5'- -aCGCGUguucgGCAUgcugaucgAGCGCCAC-AACUCg -3'
miRNA:   3'- ggGCGCG-----UGUAa-------UCGCGGUGgUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 20695 0.68 0.855437
Target:  5'- gCCGUGaCACca-AGcCGCCGCCAACg- -3'
miRNA:   3'- gGGCGC-GUGuaaUC-GCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 47602 0.68 0.813301
Target:  5'- gCCgGCGCGCGUU--UGCCGCuCAACa- -3'
miRNA:   3'- -GGgCGCGUGUAAucGCGGUG-GUUGag -5'
6915 5' -54.8 NC_001875.2 + 17102 0.68 0.847401
Target:  5'- gCCGCGCGCcacUGGCGgCCGCauaAGCa- -3'
miRNA:   3'- gGGCGCGUGua-AUCGC-GGUGg--UUGag -5'
6915 5' -54.8 NC_001875.2 + 74313 0.68 0.847401
Target:  5'- aCgGCGCGCA--GGCGCCGgaCAGCa- -3'
miRNA:   3'- gGgCGCGUGUaaUCGCGGUg-GUUGag -5'
6915 5' -54.8 NC_001875.2 + 42802 0.68 0.847401
Target:  5'- gCCCGCGCACGggcaCGCUGaaugaCAACUUg -3'
miRNA:   3'- -GGGCGCGUGUaaucGCGGUg----GUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 102028 0.68 0.813301
Target:  5'- -gCGUGC-CGUUGacccauGCGCCGCCAGCg- -3'
miRNA:   3'- ggGCGCGuGUAAU------CGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 16281 0.68 0.816843
Target:  5'- aCgCGUGCACAUgUAGCccaucuguggaauagGCCGCCAACc- -3'
miRNA:   3'- -GgGCGCGUGUA-AUCG---------------CGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 91907 0.68 0.822104
Target:  5'- aCCGCGCGCAaaUUGcGCGCagGCC-GCUUa -3'
miRNA:   3'- gGGCGCGUGU--AAU-CGCGg-UGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 81474 0.68 0.830727
Target:  5'- gUCCGCGguCAgUGGCGCgcgcggcccgaCGCCAACg- -3'
miRNA:   3'- -GGGCGCguGUaAUCGCG-----------GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 101390 0.68 0.830727
Target:  5'- -aCGCGCGCAac-GCGC-GCCAGCUg -3'
miRNA:   3'- ggGCGCGUGUaauCGCGgUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 77043 0.68 0.847401
Target:  5'- gCCGCGuCGCGgugcUAGUGCCGCCcGgUUg -3'
miRNA:   3'- gGGCGC-GUGUa---AUCGCGGUGGuUgAG- -5'
6915 5' -54.8 NC_001875.2 + 240 0.68 0.847401
Target:  5'- aUUGCGCACGUUuuucAGCGCgGCgGGgUCg -3'
miRNA:   3'- gGGCGCGUGUAA----UCGCGgUGgUUgAG- -5'
6915 5' -54.8 NC_001875.2 + 31927 0.68 0.847401
Target:  5'- aCCGCGCGCG--GGC-CCGCuCGuugcGCUCg -3'
miRNA:   3'- gGGCGCGUGUaaUCGcGGUG-GU----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 3830 0.68 0.855437
Target:  5'- gUCgGCGCACGccGGCGCgGCCGcagcCUCc -3'
miRNA:   3'- -GGgCGCGUGUaaUCGCGgUGGUu---GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.