miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 53528 0.75 0.482135
Target:  5'- uUgGCGCACGUcguGCGCUACCAGCg- -3'
miRNA:   3'- gGgCGCGUGUAau-CGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 62380 0.75 0.482135
Target:  5'- -aCGCGCACGUuguuUAGCGUgGCCGGCg- -3'
miRNA:   3'- ggGCGCGUGUA----AUCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 124765 0.74 0.491849
Target:  5'- gUCUGCGCACAggccggUGGCGUCGCCGcaGCg- -3'
miRNA:   3'- -GGGCGCGUGUa-----AUCGCGGUGGU--UGag -5'
6915 5' -54.8 NC_001875.2 + 81358 0.74 0.501653
Target:  5'- gCCGCGCGCAc--GCGCCgGCCGcgucGCUCc -3'
miRNA:   3'- gGGCGCGUGUaauCGCGG-UGGU----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 9137 0.74 0.501653
Target:  5'- aCUCGCGCGCcaGUUcgguguccacGGCGCaCGCCAACUUu -3'
miRNA:   3'- -GGGCGCGUG--UAA----------UCGCG-GUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 33487 0.74 0.52151
Target:  5'- gCCGCGCGCugggguGCGCCaACCGAUUg -3'
miRNA:   3'- gGGCGCGUGuaau--CGCGG-UGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 18234 0.74 0.52151
Target:  5'- gCCGC-CGCGgcc-CGCCGCCGACUCg -3'
miRNA:   3'- gGGCGcGUGUaaucGCGGUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 120961 0.74 0.531553
Target:  5'- -aCGuUGCGCGgcAGCGCCACCGACg- -3'
miRNA:   3'- ggGC-GCGUGUaaUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 42061 0.74 0.531553
Target:  5'- uUCGCGCACGUgcacgAGCGCguCGCCGAC-Ca -3'
miRNA:   3'- gGGCGCGUGUAa----UCGCG--GUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 98032 0.73 0.541665
Target:  5'- cCCCGCGCGCcgU-GCGCCgACgGGCa- -3'
miRNA:   3'- -GGGCGCGUGuaAuCGCGG-UGgUUGag -5'
6915 5' -54.8 NC_001875.2 + 35475 0.73 0.541665
Target:  5'- aCCUGCaGCGCAUguGCGCCAgCAACg- -3'
miRNA:   3'- -GGGCG-CGUGUAauCGCGGUgGUUGag -5'
6915 5' -54.8 NC_001875.2 + 83024 0.73 0.561048
Target:  5'- aCCGCGCGCAgcgaguGCGCCACgugaucgCGGCUg -3'
miRNA:   3'- gGGCGCGUGUaau---CGCGGUG-------GUUGAg -5'
6915 5' -54.8 NC_001875.2 + 62601 0.73 0.562073
Target:  5'- gCCCaGCGCGCcgUucGaCGCCGCCGugUCc -3'
miRNA:   3'- -GGG-CGCGUGuaAu-C-GCGGUGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 48826 0.73 0.572356
Target:  5'- cUCCGCGCGCuacGGCGCCGCUucaAGCcCg -3'
miRNA:   3'- -GGGCGCGUGuaaUCGCGGUGG---UUGaG- -5'
6915 5' -54.8 NC_001875.2 + 29876 0.73 0.572356
Target:  5'- gCCUGCGuCGCGUU--CGCCACCGGCg- -3'
miRNA:   3'- -GGGCGC-GUGUAAucGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 66237 0.73 0.572356
Target:  5'- aCCGgGUgaGCGUUucgcacuGCGCCGCCAACUg -3'
miRNA:   3'- gGGCgCG--UGUAAu------CGCGGUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 110589 0.73 0.572356
Target:  5'- gCCGCGCGC----GCGCCuggACCAGCUUc -3'
miRNA:   3'- gGGCGCGUGuaauCGCGG---UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 32123 0.73 0.582684
Target:  5'- -gCGCGCACuugcgAGCGCCGCauagcGCUCa -3'
miRNA:   3'- ggGCGCGUGuaa--UCGCGGUGgu---UGAG- -5'
6915 5' -54.8 NC_001875.2 + 32781 0.73 0.582684
Target:  5'- cCUCGCGCgGCGUgggcgGGCGCCgcGCCGgcaaGCUCg -3'
miRNA:   3'- -GGGCGCG-UGUAa----UCGCGG--UGGU----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 70213 0.73 0.582684
Target:  5'- aCUGgGCGCccgaGGCGCCGCCGACa- -3'
miRNA:   3'- gGGCgCGUGuaa-UCGCGGUGGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.