miRNA display CGI


Results 41 - 60 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 32781 0.73 0.582684
Target:  5'- cCUCGCGCgGCGUgggcgGGCGCCgcGCCGgcaaGCUCg -3'
miRNA:   3'- -GGGCGCG-UGUAa----UCGCGG--UGGU----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 7015 0.73 0.582684
Target:  5'- gCCgGCgGCGCGUaucugaccuuUAGCGCCGCCAcGCUg -3'
miRNA:   3'- -GGgCG-CGUGUA----------AUCGCGGUGGU-UGAg -5'
6915 5' -54.8 NC_001875.2 + 74508 0.73 0.586825
Target:  5'- gCCGCGCGCAgcgcugccgcaacaaUU-GCGUCGCCGACg- -3'
miRNA:   3'- gGGCGCGUGU---------------AAuCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 16858 0.72 0.603441
Target:  5'- gCCGUGUuaAUcGGCGCCGCCAGCg- -3'
miRNA:   3'- gGGCGCGugUAaUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 40711 0.72 0.603441
Target:  5'- gCCGCGCGC----GCGUCAUCAACUa -3'
miRNA:   3'- gGGCGCGUGuaauCGCGGUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 33858 0.72 0.603441
Target:  5'- gUCGCGCACcgU-GCGCgGCCGGCa- -3'
miRNA:   3'- gGGCGCGUGuaAuCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 21196 0.72 0.603441
Target:  5'- uCgCGCgGCACGgccAGCGCCACCAGgUUg -3'
miRNA:   3'- -GgGCG-CGUGUaa-UCGCGGUGGUUgAG- -5'
6915 5' -54.8 NC_001875.2 + 20907 0.72 0.603441
Target:  5'- gCCCGU-CGCAUUGuucgugugggcGCGCCaugGCCAGCUCa -3'
miRNA:   3'- -GGGCGcGUGUAAU-----------CGCGG---UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 75385 0.72 0.603441
Target:  5'- -aCGCGCGCGgacccCGCCACCGGcCUCa -3'
miRNA:   3'- ggGCGCGUGUaauc-GCGGUGGUU-GAG- -5'
6915 5' -54.8 NC_001875.2 + 21842 0.72 0.603441
Target:  5'- -gCGCGCGCGUcaaCGCCACCGAC-Cg -3'
miRNA:   3'- ggGCGCGUGUAaucGCGGUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 73025 0.72 0.603441
Target:  5'- -aCGCGCGCAUUuccgcguGCaGCUggGCCAACUCg -3'
miRNA:   3'- ggGCGCGUGUAAu------CG-CGG--UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 12789 0.72 0.603441
Target:  5'- gCCGCGCACAU--GCGCaCGCCGGa-- -3'
miRNA:   3'- gGGCGCGUGUAauCGCG-GUGGUUgag -5'
6915 5' -54.8 NC_001875.2 + 99925 0.72 0.603441
Target:  5'- gCCgCGCGCGCGgugcAGCGCgGCCAAgUUu -3'
miRNA:   3'- -GG-GCGCGUGUaa--UCGCGgUGGUUgAG- -5'
6915 5' -54.8 NC_001875.2 + 109858 0.72 0.607606
Target:  5'- gCUGCGCGCGUuugccaagcuggcgcUGGCGCCGCCca-UCc -3'
miRNA:   3'- gGGCGCGUGUA---------------AUCGCGGUGGuugAG- -5'
6915 5' -54.8 NC_001875.2 + 96449 0.72 0.622201
Target:  5'- gCUCGCGCGCGccacggacagcAGCGCCuCCAGCUg -3'
miRNA:   3'- -GGGCGCGUGUaa---------UCGCGGuGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 122158 0.72 0.623244
Target:  5'- -aCGCGCACAauUUuuucgacAGCGCCGCgCAGCUg -3'
miRNA:   3'- ggGCGCGUGU--AA-------UCGCGGUG-GUUGAg -5'
6915 5' -54.8 NC_001875.2 + 40089 0.72 0.624288
Target:  5'- gCCGCgGCGCugacGCGCCACUGGCUg -3'
miRNA:   3'- gGGCG-CGUGuaauCGCGGUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 40606 0.72 0.624288
Target:  5'- aCgGCGC-CGUggugGGCGCCACCAcgcgcCUCg -3'
miRNA:   3'- gGgCGCGuGUAa---UCGCGGUGGUu----GAG- -5'
6915 5' -54.8 NC_001875.2 + 3227 0.72 0.624288
Target:  5'- gCgUGgGCGCGUUGGCGUUguuggACCGGCUCa -3'
miRNA:   3'- -GgGCgCGUGUAAUCGCGG-----UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 110814 0.72 0.630549
Target:  5'- gCCGCGCAgGUggacgcgcugguGCGCCGCgGACUg -3'
miRNA:   3'- gGGCGCGUgUAau----------CGCGGUGgUUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.