miRNA display CGI


Results 61 - 80 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 94796 0.72 0.634724
Target:  5'- gUCCGCGCGCGUgcAGCGCCguGCaCGGC-Ca -3'
miRNA:   3'- -GGGCGCGUGUAa-UCGCGG--UG-GUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 17284 0.72 0.638899
Target:  5'- aUCCGcCGCACuggagcgucgugAGCGCCGCCGAUg- -3'
miRNA:   3'- -GGGC-GCGUGuaa---------UCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 30455 0.72 0.645159
Target:  5'- gCUgGCGCGCGUUGcgcGCGUUugCAACUUg -3'
miRNA:   3'- -GGgCGCGUGUAAU---CGCGGugGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 55924 0.72 0.645159
Target:  5'- aCCCGCGUAaugUGGUugGCCAgCAGCUUg -3'
miRNA:   3'- -GGGCGCGUguaAUCG--CGGUgGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 113571 0.72 0.645159
Target:  5'- gUCGCGCACGgc-GCGCCauuggGCCAGCa- -3'
miRNA:   3'- gGGCGCGUGUaauCGCGG-----UGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 83588 0.72 0.645159
Target:  5'- uCCCG-GCGg---GGCGCCGCCGuaGCUCa -3'
miRNA:   3'- -GGGCgCGUguaaUCGCGGUGGU--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 50128 0.72 0.645159
Target:  5'- -aCGCGCACG-UAGCGCUcuuCCAGCg- -3'
miRNA:   3'- ggGCGCGUGUaAUCGCGGu--GGUUGag -5'
6915 5' -54.8 NC_001875.2 + 65811 0.72 0.645159
Target:  5'- gCCUGCGCgGCGccaAGCGCUugCAGCUg -3'
miRNA:   3'- -GGGCGCG-UGUaa-UCGCGGugGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 77251 0.71 0.655582
Target:  5'- aCCGCGC-CGUgggcGCGCCGCCGGg-- -3'
miRNA:   3'- gGGCGCGuGUAau--CGCGGUGGUUgag -5'
6915 5' -54.8 NC_001875.2 + 41171 0.71 0.655582
Target:  5'- aCUGUGCGCAgccccAGCGCCAgCGuagaGCUCg -3'
miRNA:   3'- gGGCGCGUGUaa---UCGCGGUgGU----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 40394 0.71 0.665986
Target:  5'- -aUGCGCGCccacGCGCCGCC-GCUCa -3'
miRNA:   3'- ggGCGCGUGuaauCGCGGUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 37980 0.71 0.665986
Target:  5'- gCCUGCGCGCuc-AGCGCCGaCAAC-Cg -3'
miRNA:   3'- -GGGCGCGUGuaaUCGCGGUgGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 119058 0.71 0.665986
Target:  5'- -gCGUGCGCAUgugcgcGGCGCC-CCGGCUg -3'
miRNA:   3'- ggGCGCGUGUAa-----UCGCGGuGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 54183 0.71 0.665986
Target:  5'- gCgGCGCuGCGUUGGCGuCCACCAGa-- -3'
miRNA:   3'- gGgCGCG-UGUAAUCGC-GGUGGUUgag -5'
6915 5' -54.8 NC_001875.2 + 36493 0.71 0.665986
Target:  5'- aCgCGUGCACGU--GCGCCGCCggUUa -3'
miRNA:   3'- -GgGCGCGUGUAauCGCGGUGGuuGAg -5'
6915 5' -54.8 NC_001875.2 + 2942 0.71 0.665986
Target:  5'- aCCGCGCGC--UGGCGC-GCUuGCUCg -3'
miRNA:   3'- gGGCGCGUGuaAUCGCGgUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 50516 0.71 0.673253
Target:  5'- gCCGCGCgGCAcgaugacgaggaggaGGCGCCGCCGGCg- -3'
miRNA:   3'- gGGCGCG-UGUaa-------------UCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 66108 0.71 0.67429
Target:  5'- gCCCGCGCgGCGggcggcgaggcGGCGCCGCCcGCg- -3'
miRNA:   3'- -GGGCGCG-UGUaa---------UCGCGGUGGuUGag -5'
6915 5' -54.8 NC_001875.2 + 18705 0.71 0.676362
Target:  5'- -gCGUGCACAUUAacGUGCCGCaCAACa- -3'
miRNA:   3'- ggGCGCGUGUAAU--CGCGGUG-GUUGag -5'
6915 5' -54.8 NC_001875.2 + 45430 0.71 0.676362
Target:  5'- gCCGCGCAgGUUGuuuuGCGCguCgAACUCg -3'
miRNA:   3'- gGGCGCGUgUAAU----CGCGguGgUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.