miRNA display CGI


Results 81 - 100 of 297 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 18705 0.71 0.676362
Target:  5'- -gCGUGCACAUUAacGUGCCGCaCAACa- -3'
miRNA:   3'- ggGCGCGUGUAAU--CGCGGUG-GUUGag -5'
6915 5' -54.8 NC_001875.2 + 10397 0.71 0.6867
Target:  5'- gCCGcCGCGCcgUGGCGCggCACCcGCUg -3'
miRNA:   3'- gGGC-GCGUGuaAUCGCG--GUGGuUGAg -5'
6915 5' -54.8 NC_001875.2 + 32917 0.71 0.6867
Target:  5'- gUCGCGCACGcgcaaccGCGCCGCgAGCUa -3'
miRNA:   3'- gGGCGCGUGUaau----CGCGGUGgUUGAg -5'
6915 5' -54.8 NC_001875.2 + 5218 0.71 0.6867
Target:  5'- gCCCGaCGCcacgaucgACAU--GCGCCACCAGCcCa -3'
miRNA:   3'- -GGGC-GCG--------UGUAauCGCGGUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 98365 0.71 0.6867
Target:  5'- cCCCaGCGCGCGgc-GCGCCACU--UUCg -3'
miRNA:   3'- -GGG-CGCGUGUaauCGCGGUGGuuGAG- -5'
6915 5' -54.8 NC_001875.2 + 5938 0.71 0.696991
Target:  5'- gCCGCGCAgGUgGGCGCgGCCucGCa- -3'
miRNA:   3'- gGGCGCGUgUAaUCGCGgUGGu-UGag -5'
6915 5' -54.8 NC_001875.2 + 87373 0.71 0.696991
Target:  5'- gCCgGUGCACGacUUGGCGCacugCGCCGACg- -3'
miRNA:   3'- -GGgCGCGUGU--AAUCGCG----GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 62477 0.71 0.696991
Target:  5'- aCgGCGCGCAgcgGGCGCaCGCCGcugACUg -3'
miRNA:   3'- gGgCGCGUGUaa-UCGCG-GUGGU---UGAg -5'
6915 5' -54.8 NC_001875.2 + 51971 0.71 0.696991
Target:  5'- aCgCGCGCGCGUggaccacGCGCCACCccAACa- -3'
miRNA:   3'- -GgGCGCGUGUAau-----CGCGGUGG--UUGag -5'
6915 5' -54.8 NC_001875.2 + 112824 0.71 0.696991
Target:  5'- gCCGCGCACGUgcaaAGCGCgUugCGGCc- -3'
miRNA:   3'- gGGCGCGUGUAa---UCGCG-GugGUUGag -5'
6915 5' -54.8 NC_001875.2 + 111048 0.7 0.707226
Target:  5'- gCCCGCGCACugc-GCGUCGaCGGCUUc -3'
miRNA:   3'- -GGGCGCGUGuaauCGCGGUgGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 21570 0.7 0.707226
Target:  5'- gCCCGCGCGCuc---CGCgGCCAGC-Cg -3'
miRNA:   3'- -GGGCGCGUGuaaucGCGgUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 31698 0.7 0.707226
Target:  5'- aCCGC-CGCuUgcGCGCCGCCGGCg- -3'
miRNA:   3'- gGGCGcGUGuAauCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 85615 0.7 0.707226
Target:  5'- -aCGCGCuugugauauCGUUcgcAGCGCCGCCA-CUCa -3'
miRNA:   3'- ggGCGCGu--------GUAA---UCGCGGUGGUuGAG- -5'
6915 5' -54.8 NC_001875.2 + 113827 0.7 0.713336
Target:  5'- gUCGCGCGCG-UAGCGCC-CCAugaacauuucgauCUCa -3'
miRNA:   3'- gGGCGCGUGUaAUCGCGGuGGUu------------GAG- -5'
6915 5' -54.8 NC_001875.2 + 70243 0.7 0.716381
Target:  5'- gCCaGCGCGCGgugaucgGGCGCUACCuccaccucgucggAACUCa -3'
miRNA:   3'- gGG-CGCGUGUaa-----UCGCGGUGG-------------UUGAG- -5'
6915 5' -54.8 NC_001875.2 + 49586 0.7 0.717394
Target:  5'- gCUGCGCGCcgacgAGCGCUACCAccaGCg- -3'
miRNA:   3'- gGGCGCGUGuaa--UCGCGGUGGU---UGag -5'
6915 5' -54.8 NC_001875.2 + 130431 0.7 0.717394
Target:  5'- aCCGCuaaaaauaGCACAccagGGCGCCGCUGACg- -3'
miRNA:   3'- gGGCG--------CGUGUaa--UCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 49137 0.7 0.717394
Target:  5'- cCCUGCGCgACuggcGGCGCUACCAGgaCg -3'
miRNA:   3'- -GGGCGCG-UGuaa-UCGCGGUGGUUgaG- -5'
6915 5' -54.8 NC_001875.2 + 23998 0.7 0.717394
Target:  5'- aCUCGCGCGCGUcgcaaGGCGCaccgggCGCgGGCUCg -3'
miRNA:   3'- -GGGCGCGUGUAa----UCGCG------GUGgUUGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.