miRNA display CGI


Results 101 - 120 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 101167 0.7 0.717394
Target:  5'- gCCGUGCGCG-UGGCGCUggucaauuacguGCCGGCg- -3'
miRNA:   3'- gGGCGCGUGUaAUCGCGG------------UGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 41354 0.7 0.727487
Target:  5'- gCCGCGCGCAguuugaacGCGCgCugCAGCg- -3'
miRNA:   3'- gGGCGCGUGUaau-----CGCG-GugGUUGag -5'
6915 5' -54.8 NC_001875.2 + 66775 0.7 0.746419
Target:  5'- gCCCaGCGU--GUUGGCGCCGCCGuuguaaaACUUu -3'
miRNA:   3'- -GGG-CGCGugUAAUCGCGGUGGU-------UGAG- -5'
6915 5' -54.8 NC_001875.2 + 47485 0.7 0.747406
Target:  5'- gCCGCGCACcuaccGGCGCaGCC-GCUCc -3'
miRNA:   3'- gGGCGCGUGuaa--UCGCGgUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 16879 0.7 0.747406
Target:  5'- cCCUGguuguaugcguaCGCGCAgcGGCGCCGCgAugUCg -3'
miRNA:   3'- -GGGC------------GCGUGUaaUCGCGGUGgUugAG- -5'
6915 5' -54.8 NC_001875.2 + 14412 0.7 0.747406
Target:  5'- --aGCGUAUg--GGCGCCACCGGCa- -3'
miRNA:   3'- gggCGCGUGuaaUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 120674 0.7 0.747406
Target:  5'- aCgGCGCGCugcuguGCGCCAUCGAC-Cg -3'
miRNA:   3'- gGgCGCGUGuaau--CGCGGUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 60386 0.7 0.751341
Target:  5'- -gCGCGCACGaUGGCcgaagagaacguguuGCCgccGCCAACUCu -3'
miRNA:   3'- ggGCGCGUGUaAUCG---------------CGG---UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 119905 0.7 0.756237
Target:  5'- uCgCGCGCACAgucGGCGCgccgcgcgcaaaaCACCuGCUCg -3'
miRNA:   3'- -GgGCGCGUGUaa-UCGCG-------------GUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 92521 0.7 0.757212
Target:  5'- gCUCGUGCGCGcccGGCGCguuuucucugcaCACCAACUUg -3'
miRNA:   3'- -GGGCGCGUGUaa-UCGCG------------GUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 4548 0.7 0.757212
Target:  5'- uCCUGCGguUug-GGgGCCGCCAGCa- -3'
miRNA:   3'- -GGGCGCguGuaaUCgCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 18301 0.7 0.757212
Target:  5'- uUCGCGCGCuuAUUGGCcCCGCCGccGCUUu -3'
miRNA:   3'- gGGCGCGUG--UAAUCGcGGUGGU--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 62249 0.7 0.757212
Target:  5'- gCCGCGUAa---AGCGCCACacguACUCc -3'
miRNA:   3'- gGGCGCGUguaaUCGCGGUGgu--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 5010 0.7 0.757212
Target:  5'- aCuuGUGCACuuu-GCGCCGCCucgguCUCc -3'
miRNA:   3'- -GggCGCGUGuaauCGCGGUGGuu---GAG- -5'
6915 5' -54.8 NC_001875.2 + 100646 0.69 0.766904
Target:  5'- -gCGUGCGCGUcAGCccCCACCAAUUCc -3'
miRNA:   3'- ggGCGCGUGUAaUCGc-GGUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 118387 0.69 0.766904
Target:  5'- aCCUGUGCAaggaGGCGuCCGCCGACcCg -3'
miRNA:   3'- -GGGCGCGUguaaUCGC-GGUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 33054 0.69 0.766904
Target:  5'- gCCGCGCGgA-UAGCGuuCCGCgCGGCUCc -3'
miRNA:   3'- gGGCGCGUgUaAUCGC--GGUG-GUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 38058 0.69 0.766904
Target:  5'- gCCCGCGCGacuu-GCGCCGuaaaCGGCUUg -3'
miRNA:   3'- -GGGCGCGUguaauCGCGGUg---GUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 98160 0.69 0.770746
Target:  5'- gCgGCGCACGUcgGGCcguuuguuuuaccacGCCGCCGACg- -3'
miRNA:   3'- gGgCGCGUGUAa-UCG---------------CGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 110771 0.69 0.773614
Target:  5'- gCCGCGCGCuuuugcccaaaaCGCCGCCGAC-Ca -3'
miRNA:   3'- gGGCGCGUGuaauc-------GCGGUGGUUGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.