miRNA display CGI


Results 121 - 140 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 64932 0.69 0.773614
Target:  5'- gCCCGUGCccaGCAUuaugcaaaacacgaUGGCGCCGCgAAUUa -3'
miRNA:   3'- -GGGCGCG---UGUA--------------AUCGCGGUGgUUGAg -5'
6915 5' -54.8 NC_001875.2 + 52715 0.69 0.776471
Target:  5'- gCCCGC-CGCGgcgccCGCCGCCGACa- -3'
miRNA:   3'- -GGGCGcGUGUaauc-GCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 46547 0.69 0.776471
Target:  5'- gCCCGCGC-Cc---GCGCCGCCcGCg- -3'
miRNA:   3'- -GGGCGCGuGuaauCGCGGUGGuUGag -5'
6915 5' -54.8 NC_001875.2 + 88065 0.69 0.776471
Target:  5'- gCCCGCGUACGUUAcgucuGCGCaaaCGCCcGCg- -3'
miRNA:   3'- -GGGCGCGUGUAAU-----CGCG---GUGGuUGag -5'
6915 5' -54.8 NC_001875.2 + 128736 0.69 0.785903
Target:  5'- gUCUGCGCGCGagccGCGCC-CCGGCg- -3'
miRNA:   3'- -GGGCGCGUGUaau-CGCGGuGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 29395 0.69 0.785903
Target:  5'- uUCCGgGCgGCAagGGCGCCAacCCGgcGCUCg -3'
miRNA:   3'- -GGGCgCG-UGUaaUCGCGGU--GGU--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 92525 0.69 0.785903
Target:  5'- -gCGCGCGCA----CGCCGCCGGCa- -3'
miRNA:   3'- ggGCGCGUGUaaucGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 118998 0.69 0.785903
Target:  5'- gCUGCGUGCuagccGGCGCCGCCGGgUUu -3'
miRNA:   3'- gGGCGCGUGuaa--UCGCGGUGGUUgAG- -5'
6915 5' -54.8 NC_001875.2 + 100906 0.69 0.785903
Target:  5'- gCCgcaGCGCGCGgagacGCGUCGCCGcGCUCg -3'
miRNA:   3'- -GGg--CGCGUGUaau--CGCGGUGGU-UGAG- -5'
6915 5' -54.8 NC_001875.2 + 111192 0.69 0.785903
Target:  5'- -gCGCGCugGgcGGCGCgCGCCGuuuuuuguuGCUCa -3'
miRNA:   3'- ggGCGCGugUaaUCGCG-GUGGU---------UGAG- -5'
6915 5' -54.8 NC_001875.2 + 9785 0.69 0.792421
Target:  5'- aCCCGCuccgggguguacuuGCAC---GGCGCCAUCGGCg- -3'
miRNA:   3'- -GGGCG--------------CGUGuaaUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 38617 0.69 0.79427
Target:  5'- --aGCGCACcgcugUGGaaaaccaguuuaaCGCCGCCGACUCg -3'
miRNA:   3'- gggCGCGUGua---AUC-------------GCGGUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 107420 0.69 0.795192
Target:  5'- gCCCGCGCGuucaGUUA-CGCCcccgacGCCAGCUUu -3'
miRNA:   3'- -GGGCGCGUg---UAAUcGCGG------UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 75129 0.69 0.795192
Target:  5'- aCCGCGUACGUUucGCGCgGCCucGGC-Ca -3'
miRNA:   3'- gGGCGCGUGUAAu-CGCGgUGG--UUGaG- -5'
6915 5' -54.8 NC_001875.2 + 117890 0.69 0.795192
Target:  5'- uUuuGCGCACAUguacuGUGCCGaCAugUCa -3'
miRNA:   3'- -GggCGCGUGUAau---CGCGGUgGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 59902 0.69 0.796113
Target:  5'- gCUGCGCGCGgagcgcgcggucaaGGCGCuCGCCGACg- -3'
miRNA:   3'- gGGCGCGUGUaa------------UCGCG-GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 50950 0.69 0.803421
Target:  5'- gCUCGCGCgacuugcucugccACucuUUGGCGCgCGCCGAgUCg -3'
miRNA:   3'- -GGGCGCG-------------UGu--AAUCGCG-GUGGUUgAG- -5'
6915 5' -54.8 NC_001875.2 + 20054 0.69 0.804328
Target:  5'- gCCGCGUGCAccgcCGUCACCAGCg- -3'
miRNA:   3'- gGGCGCGUGUaaucGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 41454 0.69 0.804328
Target:  5'- -aCGCGU---UUAGCGCCAUCGACg- -3'
miRNA:   3'- ggGCGCGuguAAUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 88248 0.69 0.804328
Target:  5'- -gCGCGCGCcgccGCuGCCGCCGuACUCg -3'
miRNA:   3'- ggGCGCGUGuaauCG-CGGUGGU-UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.