miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 76329 0.66 0.92335
Target:  5'- gCCGCcaucgaGCAgGUgcuGCGCCACCAGg-- -3'
miRNA:   3'- gGGCG------CGUgUAau-CGCGGUGGUUgag -5'
6915 5' -54.8 NC_001875.2 + 36095 0.66 0.92335
Target:  5'- gCUCGCGCggcagcacGCGgcGGCGgCGCC-GCUCa -3'
miRNA:   3'- -GGGCGCG--------UGUaaUCGCgGUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 119859 0.66 0.92335
Target:  5'- aCCCGCGCcCAacgcCGUCGCCAguGCUUc -3'
miRNA:   3'- -GGGCGCGuGUaaucGCGGUGGU--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 98333 0.66 0.92279
Target:  5'- -aCGUGCACAUguUGGCGCUGCggcacguCGACUa -3'
miRNA:   3'- ggGCGCGUGUA--AUCGCGGUG-------GUUGAg -5'
6915 5' -54.8 NC_001875.2 + 22841 0.66 0.91764
Target:  5'- gCCGCGaaGCGUUuGCGCgACCGAgUUg -3'
miRNA:   3'- gGGCGCg-UGUAAuCGCGgUGGUUgAG- -5'
6915 5' -54.8 NC_001875.2 + 11929 0.66 0.91764
Target:  5'- uUuuGCGCGC---GGCGC-GCCGACUg -3'
miRNA:   3'- -GggCGCGUGuaaUCGCGgUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 17345 0.66 0.91764
Target:  5'- gCCGCGCgaccGCGUcagAGUGCUGCCGcacauCUCu -3'
miRNA:   3'- gGGCGCG----UGUAa--UCGCGGUGGUu----GAG- -5'
6915 5' -54.8 NC_001875.2 + 47422 0.66 0.91764
Target:  5'- aUCCGCcgaugGCACcuauacGCGCCGCCGccgaaGCUCc -3'
miRNA:   3'- -GGGCG-----CGUGuaau--CGCGGUGGU-----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 90988 0.66 0.91764
Target:  5'- gCCCGCgguGCGCGUcuUGGCGagCGCCGuCUUg -3'
miRNA:   3'- -GGGCG---CGUGUA--AUCGCg-GUGGUuGAG- -5'
6915 5' -54.8 NC_001875.2 + 334 0.66 0.91764
Target:  5'- gCCGCuGCACcgc-GCGCCGCaGACUg -3'
miRNA:   3'- gGGCG-CGUGuaauCGCGGUGgUUGAg -5'
6915 5' -54.8 NC_001875.2 + 13756 0.66 0.91764
Target:  5'- gUCGCGCACAaagUGGUGgCAgCAGuCUCc -3'
miRNA:   3'- gGGCGCGUGUa--AUCGCgGUgGUU-GAG- -5'
6915 5' -54.8 NC_001875.2 + 40863 0.66 0.91764
Target:  5'- -aCGCGCACcgcgGGCGCCAuCCugguGCa- -3'
miRNA:   3'- ggGCGCGUGuaa-UCGCGGU-GGu---UGag -5'
6915 5' -54.8 NC_001875.2 + 16018 0.66 0.91764
Target:  5'- gCCGCGaggucaACGU---CGCCACCAACa- -3'
miRNA:   3'- gGGCGCg-----UGUAaucGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 1060 0.66 0.91764
Target:  5'- --gGCGCaACGUUGGCGaCCGCgCGgucagGCUCa -3'
miRNA:   3'- gggCGCG-UGUAAUCGC-GGUG-GU-----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 85792 0.66 0.914095
Target:  5'- uUCUGCGCcguucauguugugaaGCAUUuccGCGgCGCCAGCUg -3'
miRNA:   3'- -GGGCGCG---------------UGUAAu--CGCgGUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 91752 0.66 0.911683
Target:  5'- gCCaGUgGCGCGUcAGCGCCGCgGcCUCg -3'
miRNA:   3'- gGG-CG-CGUGUAaUCGCGGUGgUuGAG- -5'
6915 5' -54.8 NC_001875.2 + 91167 0.66 0.911683
Target:  5'- gCCGCGUcaugguccACAgcGGCGCUugCGugUUg -3'
miRNA:   3'- gGGCGCG--------UGUaaUCGCGGugGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 54004 0.66 0.911683
Target:  5'- gUCGCGCACGgccUUGGCGgCGCgCGcguaccggcACUCg -3'
miRNA:   3'- gGGCGCGUGU---AAUCGCgGUG-GU---------UGAG- -5'
6915 5' -54.8 NC_001875.2 + 11085 0.66 0.911683
Target:  5'- -gCGCGCGCccUGGacacgGCCGCCGuCUCg -3'
miRNA:   3'- ggGCGCGUGuaAUCg----CGGUGGUuGAG- -5'
6915 5' -54.8 NC_001875.2 + 18283 0.66 0.911683
Target:  5'- gCCGUGCGCGaccGCGCCGuuGAUUg -3'
miRNA:   3'- gGGCGCGUGUaauCGCGGUggUUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.