miRNA display CGI


Results 41 - 60 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 61610 0.66 0.911683
Target:  5'- aCCGCGCGCuggcUUGGCGagaacugaUCGCUAACg- -3'
miRNA:   3'- gGGCGCGUGu---AAUCGC--------GGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 97887 0.66 0.911683
Target:  5'- gCCGCacggGCACGUUgcgGGCGUCggcGCCGACg- -3'
miRNA:   3'- gGGCG----CGUGUAA---UCGCGG---UGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 11085 0.66 0.911683
Target:  5'- -gCGCGCGCccUGGacacgGCCGCCGuCUCg -3'
miRNA:   3'- ggGCGCGUGuaAUCg----CGGUGGUuGAG- -5'
6915 5' -54.8 NC_001875.2 + 78983 0.66 0.911683
Target:  5'- -aCGCGCAgGUagaAGCGCgucaACCAGCUg -3'
miRNA:   3'- ggGCGCGUgUAa--UCGCGg---UGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 54004 0.66 0.911683
Target:  5'- gUCGCGCACGgccUUGGCGgCGCgCGcguaccggcACUCg -3'
miRNA:   3'- gGGCGCGUGU---AAUCGCgGUG-GU---------UGAG- -5'
6915 5' -54.8 NC_001875.2 + 9052 0.66 0.911073
Target:  5'- gCCGCGC-CGguuuccGCGCCgguuuccGCCAACUg -3'
miRNA:   3'- gGGCGCGuGUaau---CGCGG-------UGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 110524 0.66 0.909847
Target:  5'- gCCGCGgGCcaccUGGCGCUucuugagcuuuucuGCCAGCUg -3'
miRNA:   3'- gGGCGCgUGua--AUCGCGG--------------UGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 111545 0.66 0.90799
Target:  5'- -aCGCGCACAaaauccgauaguuccUUGuGCGCCuuuACCGugUCc -3'
miRNA:   3'- ggGCGCGUGU---------------AAU-CGCGG---UGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 19475 0.66 0.905479
Target:  5'- gCUCGgGCGC--UGGUGCUGgCGGCUCg -3'
miRNA:   3'- -GGGCgCGUGuaAUCGCGGUgGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 36832 0.66 0.905479
Target:  5'- gUUGCGCGCcc--GCGCCACUAAUg- -3'
miRNA:   3'- gGGCGCGUGuaauCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 42857 0.66 0.905479
Target:  5'- uCCgGCGCGCcgcaGGCGCaggucCGCCAGCg- -3'
miRNA:   3'- -GGgCGCGUGuaa-UCGCG-----GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 98632 0.66 0.905479
Target:  5'- gCCCGCGCccGCGUU--UGCCGgCAGCg- -3'
miRNA:   3'- -GGGCGCG--UGUAAucGCGGUgGUUGag -5'
6915 5' -54.8 NC_001875.2 + 99351 0.66 0.905479
Target:  5'- gUCCGCGCAacuugGGCGCgccCGCCAAgUg -3'
miRNA:   3'- -GGGCGCGUguaa-UCGCG---GUGGUUgAg -5'
6915 5' -54.8 NC_001875.2 + 93461 0.66 0.905479
Target:  5'- gCCGCGCACuuugucAGCGCCGgguggCAACa- -3'
miRNA:   3'- gGGCGCGUGuaa---UCGCGGUg----GUUGag -5'
6915 5' -54.8 NC_001875.2 + 52210 0.66 0.905479
Target:  5'- aCUGCGCGCcgUGcaaacuggacGCGCgaCugCGGCUCa -3'
miRNA:   3'- gGGCGCGUGuaAU----------CGCG--GugGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 87956 0.66 0.904845
Target:  5'- aCCCGUacaucccGCACA-UGGCGCUGCCcauccGGCUg -3'
miRNA:   3'- -GGGCG-------CGUGUaAUCGCGGUGG-----UUGAg -5'
6915 5' -54.8 NC_001875.2 + 15217 0.66 0.899032
Target:  5'- gCUGCGCGaguacaAGCGCC-CCAACg- -3'
miRNA:   3'- gGGCGCGUguaa--UCGCGGuGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 38380 0.66 0.899032
Target:  5'- aCCCgGCGCugAcaaaguGCGCgGCCAugUUu -3'
miRNA:   3'- -GGG-CGCGugUaau---CGCGgUGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 83482 0.66 0.899032
Target:  5'- --gGCGCGCgAUUAGCGCgCugUAACg- -3'
miRNA:   3'- gggCGCGUG-UAAUCGCG-GugGUUGag -5'
6915 5' -54.8 NC_001875.2 + 39809 0.66 0.899032
Target:  5'- gCCCGUGgACGUcGGCG--GCCGACUUu -3'
miRNA:   3'- -GGGCGCgUGUAaUCGCggUGGUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.