miRNA display CGI


Results 61 - 80 of 297 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 38380 0.66 0.899032
Target:  5'- aCCCgGCGCugAcaaaguGCGCgGCCAugUUu -3'
miRNA:   3'- -GGG-CGCGugUaau---CGCGgUGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 79901 0.66 0.899032
Target:  5'- gUCGCGCcCAaagUAGCGCCGCacGCUg -3'
miRNA:   3'- gGGCGCGuGUa--AUCGCGGUGguUGAg -5'
6915 5' -54.8 NC_001875.2 + 83482 0.66 0.899032
Target:  5'- --gGCGCGCgAUUAGCGCgCugUAACg- -3'
miRNA:   3'- gggCGCGUG-UAAUCGCG-GugGUUGag -5'
6915 5' -54.8 NC_001875.2 + 39809 0.66 0.899032
Target:  5'- gCCCGUGgACGUcGGCG--GCCGACUUu -3'
miRNA:   3'- -GGGCGCgUGUAaUCGCggUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 13043 0.66 0.899032
Target:  5'- --aGCGCGCAaauaagcgcuUUGggucGCGCCACCcuaAACUCg -3'
miRNA:   3'- gggCGCGUGU----------AAU----CGCGGUGG---UUGAG- -5'
6915 5' -54.8 NC_001875.2 + 89300 0.66 0.899032
Target:  5'- gUgGC-CGCA-UGGCGCCGCCAccaugcgcuucgGCUCg -3'
miRNA:   3'- gGgCGcGUGUaAUCGCGGUGGU------------UGAG- -5'
6915 5' -54.8 NC_001875.2 + 3529 0.66 0.899032
Target:  5'- uUuuGCGCAU-UUGGCGCacguCACCGGCg- -3'
miRNA:   3'- -GggCGCGUGuAAUCGCG----GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 39964 0.66 0.898374
Target:  5'- aCCCGCcgccGCACcagcaGGCGCCcugggggcccgugGCCGACUg -3'
miRNA:   3'- -GGGCG----CGUGuaa--UCGCGG-------------UGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 47387 0.67 0.892344
Target:  5'- -aCGCGCAUcaUGGUcuaccGCCGCCGccGCUCc -3'
miRNA:   3'- ggGCGCGUGuaAUCG-----CGGUGGU--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 7086 0.67 0.892344
Target:  5'- gCCUGUGCGCAgacaugcAGCGCgCGCUGGC-Cg -3'
miRNA:   3'- -GGGCGCGUGUaa-----UCGCG-GUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 47449 0.67 0.892344
Target:  5'- aUCCGUGUACAUcggugaaauUGGUGCCGCaCAggcccAUUCg -3'
miRNA:   3'- -GGGCGCGUGUA---------AUCGCGGUG-GU-----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 42571 0.67 0.892344
Target:  5'- gCCGCGC-CAggucGGCGCaCGCgcgcguCAGCUCg -3'
miRNA:   3'- gGGCGCGuGUaa--UCGCG-GUG------GUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 59209 0.67 0.892344
Target:  5'- aCCCGCGC-CGUUuggcGUGCCGCaGGC-Cg -3'
miRNA:   3'- -GGGCGCGuGUAAu---CGCGGUGgUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 79331 0.67 0.891662
Target:  5'- -gCGCgGCGCugccuUUGGCGCCgcuguuuACCAugUCg -3'
miRNA:   3'- ggGCG-CGUGu----AAUCGCGG-------UGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 99709 0.67 0.890977
Target:  5'- aCCCGgGCGCGguuucccuuUGCUGCCAugUCg -3'
miRNA:   3'- -GGGCgCGUGUaauc-----GCGGUGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 122790 0.67 0.885418
Target:  5'- aCCgGCGCGgAaaccGGCGCgGCCGGCg- -3'
miRNA:   3'- -GGgCGCGUgUaa--UCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 15905 0.67 0.885418
Target:  5'- aCCCGCGCuACuUUGcCGgCACCGGCa- -3'
miRNA:   3'- -GGGCGCG-UGuAAUcGCgGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 36807 0.67 0.885418
Target:  5'- aCgGUGCGCGUUAcGCGCCG-CGGCa- -3'
miRNA:   3'- gGgCGCGUGUAAU-CGCGGUgGUUGag -5'
6915 5' -54.8 NC_001875.2 + 55120 0.67 0.885418
Target:  5'- gUCCGCGuCACcgacgcucAGCGCgACCGACg- -3'
miRNA:   3'- -GGGCGC-GUGuaa-----UCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 66734 0.67 0.885418
Target:  5'- uUCCGCGCAUGgucauGCuGCCGCgCGACa- -3'
miRNA:   3'- -GGGCGCGUGUaau--CG-CGGUG-GUUGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.