miRNA display CGI


Results 81 - 100 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 122790 0.67 0.885418
Target:  5'- aCCgGCGCGgAaaccGGCGCgGCCGGCg- -3'
miRNA:   3'- -GGgCGCGUgUaa--UCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 55120 0.67 0.885418
Target:  5'- gUCCGCGuCACcgacgcucAGCGCgACCGACg- -3'
miRNA:   3'- -GGGCGC-GUGuaa-----UCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 65719 0.67 0.885418
Target:  5'- uUCCGCGgGC---GGCGCCGCCucGC-Cg -3'
miRNA:   3'- -GGGCGCgUGuaaUCGCGGUGGu-UGaG- -5'
6915 5' -54.8 NC_001875.2 + 15905 0.67 0.885418
Target:  5'- aCCCGCGCuACuUUGcCGgCACCGGCa- -3'
miRNA:   3'- -GGGCGCG-UGuAAUcGCgGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 26569 0.67 0.885418
Target:  5'- uUCCGUGCACAgauugAGCGUUugCAcgGCg- -3'
miRNA:   3'- -GGGCGCGUGUaa---UCGCGGugGU--UGag -5'
6915 5' -54.8 NC_001875.2 + 3666 0.67 0.87826
Target:  5'- gCUGCGCGCuUgcGCGCCAaCCAAa-- -3'
miRNA:   3'- gGGCGCGUGuAauCGCGGU-GGUUgag -5'
6915 5' -54.8 NC_001875.2 + 57640 0.67 0.87826
Target:  5'- gCCCGCccaguuGCGCGUUGcaaaaCGCCACCAAa-- -3'
miRNA:   3'- -GGGCG------CGUGUAAUc----GCGGUGGUUgag -5'
6915 5' -54.8 NC_001875.2 + 98044 0.67 0.87826
Target:  5'- -aCGCGUguucgGCAUgcugaucgAGCGCCAC-AACUCg -3'
miRNA:   3'- ggGCGCG-----UGUAa-------UCGCGGUGgUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 18536 0.67 0.87826
Target:  5'- -aCGCGCuCGUguuUGGCaucGCCACCGACa- -3'
miRNA:   3'- ggGCGCGuGUA---AUCG---CGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 131471 0.67 0.87826
Target:  5'- gCCGaGCACAaucGCGCgGCCAACg- -3'
miRNA:   3'- gGGCgCGUGUaauCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 30966 0.67 0.87826
Target:  5'- cCCaCGCGCGCGcu-GCGCC-UCGcGCUCa -3'
miRNA:   3'- -GG-GCGCGUGUaauCGCGGuGGU-UGAG- -5'
6915 5' -54.8 NC_001875.2 + 38458 0.67 0.87826
Target:  5'- gCCgGCGCGCGcuagaaUUGGUGCagCGCguGCUCg -3'
miRNA:   3'- -GGgCGCGUGU------AAUCGCG--GUGguUGAG- -5'
6915 5' -54.8 NC_001875.2 + 68036 0.67 0.877531
Target:  5'- aCCUGCGCGCcaaagcgGUUuGCgGCCACCAGa-- -3'
miRNA:   3'- -GGGCGCGUG-------UAAuCG-CGGUGGUUgag -5'
6915 5' -54.8 NC_001875.2 + 43344 0.67 0.8768
Target:  5'- gCCGCGCACcacguacuuGCGCU-CCAgucGCUCg -3'
miRNA:   3'- gGGCGCGUGuaau-----CGCGGuGGU---UGAG- -5'
6915 5' -54.8 NC_001875.2 + 52564 0.67 0.873855
Target:  5'- aCgCGCGCcacagACAUUGacaucgucuccacgcGCGCCACCAccaGCUUa -3'
miRNA:   3'- -GgGCGCG-----UGUAAU---------------CGCGGUGGU---UGAG- -5'
6915 5' -54.8 NC_001875.2 + 52034 0.67 0.870873
Target:  5'- gCCGgGCACGUUcaAGCGgC-CCGACg- -3'
miRNA:   3'- gGGCgCGUGUAA--UCGCgGuGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 56469 0.67 0.870873
Target:  5'- gUCCGCGCGCGUguuggucAGCGCCAaaugaaaaAACg- -3'
miRNA:   3'- -GGGCGCGUGUAa------UCGCGGUgg------UUGag -5'
6915 5' -54.8 NC_001875.2 + 71153 0.67 0.870873
Target:  5'- gCCGCGUuggGCAUUacAGaaacuGCCGCCAGCg- -3'
miRNA:   3'- gGGCGCG---UGUAA--UCg----CGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 98247 0.67 0.870873
Target:  5'- gCCCGUGUuCAaccgccaCGUCGCCGACUCg -3'
miRNA:   3'- -GGGCGCGuGUaauc---GCGGUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 68859 0.67 0.870873
Target:  5'- -aCGCGUGCGcgAGUGCC-CCGACa- -3'
miRNA:   3'- ggGCGCGUGUaaUCGCGGuGGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.