miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 240 0.68 0.847401
Target:  5'- aUUGCGCACGUUuuucAGCGCgGCgGGgUCg -3'
miRNA:   3'- gGGCGCGUGUAA----UCGCGgUGgUUgAG- -5'
6915 5' -54.8 NC_001875.2 + 334 0.66 0.91764
Target:  5'- gCCGCuGCACcgc-GCGCCGCaGACUg -3'
miRNA:   3'- gGGCG-CGUGuaauCGCGGUGgUUGAg -5'
6915 5' -54.8 NC_001875.2 + 1060 0.66 0.91764
Target:  5'- --gGCGCaACGUUGGCGaCCGCgCGgucagGCUCa -3'
miRNA:   3'- gggCGCG-UGUAAUCGC-GGUG-GU-----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 2309 0.76 0.416077
Target:  5'- gCCGCGCGCAgcucGGCcagcucgGCCugCAGCUCc -3'
miRNA:   3'- gGGCGCGUGUaa--UCG-------CGGugGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 2942 0.71 0.665986
Target:  5'- aCCGCGCGC--UGGCGC-GCUuGCUCg -3'
miRNA:   3'- gGGCGCGUGuaAUCGCGgUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 3227 0.72 0.624288
Target:  5'- gCgUGgGCGCGUUGGCGUUguuggACCGGCUCa -3'
miRNA:   3'- -GgGCgCGUGUAAUCGCGG-----UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 3529 0.66 0.899032
Target:  5'- uUuuGCGCAU-UUGGCGCacguCACCGGCg- -3'
miRNA:   3'- -GggCGCGUGuAAUCGCG----GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 3666 0.67 0.87826
Target:  5'- gCUGCGCGCuUgcGCGCCAaCCAAa-- -3'
miRNA:   3'- gGGCGCGUGuAauCGCGGU-GGUUgag -5'
6915 5' -54.8 NC_001875.2 + 3830 0.68 0.855437
Target:  5'- gUCgGCGCACGccGGCGCgGCCGcagcCUCc -3'
miRNA:   3'- -GGgCGCGUGUaaUCGCGgUGGUu---GAG- -5'
6915 5' -54.8 NC_001875.2 + 4548 0.7 0.757212
Target:  5'- uCCUGCGguUug-GGgGCCGCCAGCa- -3'
miRNA:   3'- -GGGCGCguGuaaUCgCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 5010 0.7 0.757212
Target:  5'- aCuuGUGCACuuu-GCGCCGCCucgguCUCc -3'
miRNA:   3'- -GggCGCGUGuaauCGCGGUGGuu---GAG- -5'
6915 5' -54.8 NC_001875.2 + 5218 0.71 0.6867
Target:  5'- gCCCGaCGCcacgaucgACAU--GCGCCACCAGCcCa -3'
miRNA:   3'- -GGGC-GCG--------UGUAauCGCGGUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 5299 0.75 0.459211
Target:  5'- gCCCGCGCccgacgaccacucCAUUGcGCGCUACCuGCUCg -3'
miRNA:   3'- -GGGCGCGu------------GUAAU-CGCGGUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 5805 0.68 0.836651
Target:  5'- gCUGCGCAUAagguaguagacugccAGCGCCGCCGAUc- -3'
miRNA:   3'- gGGCGCGUGUaa-------------UCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 5938 0.71 0.696991
Target:  5'- gCCGCGCAgGUgGGCGCgGCCucGCa- -3'
miRNA:   3'- gGGCGCGUgUAaUCGCGgUGGu-UGag -5'
6915 5' -54.8 NC_001875.2 + 6831 0.66 0.92335
Target:  5'- gCCGCGUcgACAac-GUGCCcgacGCCAACUUg -3'
miRNA:   3'- gGGCGCG--UGUaauCGCGG----UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 7015 0.73 0.582684
Target:  5'- gCCgGCgGCGCGUaucugaccuuUAGCGCCGCCAcGCUg -3'
miRNA:   3'- -GGgCG-CGUGUA----------AUCGCGGUGGU-UGAg -5'
6915 5' -54.8 NC_001875.2 + 7086 0.67 0.892344
Target:  5'- gCCUGUGCGCAgacaugcAGCGCgCGCUGGC-Cg -3'
miRNA:   3'- -GGGCGCGUGUaa-----UCGCG-GUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 7251 0.68 0.839162
Target:  5'- uUCCGCGCuGCAgcggccUGGCGCggguCGCCGACg- -3'
miRNA:   3'- -GGGCGCG-UGUa-----AUCGCG----GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 9052 0.66 0.911073
Target:  5'- gCCGCGC-CGguuuccGCGCCgguuuccGCCAACUg -3'
miRNA:   3'- gGGCGCGuGUaau---CGCGG-------UGGUUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.