miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 9137 0.74 0.501653
Target:  5'- aCUCGCGCGCcaGUUcgguguccacGGCGCaCGCCAACUUu -3'
miRNA:   3'- -GGGCGCGUG--UAA----------UCGCG-GUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 9785 0.69 0.792421
Target:  5'- aCCCGCuccgggguguacuuGCAC---GGCGCCAUCGGCg- -3'
miRNA:   3'- -GGGCG--------------CGUGuaaUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 10397 0.71 0.6867
Target:  5'- gCCGcCGCGCcgUGGCGCggCACCcGCUg -3'
miRNA:   3'- gGGC-GCGUGuaAUCGCG--GUGGuUGAg -5'
6915 5' -54.8 NC_001875.2 + 11085 0.66 0.911683
Target:  5'- -gCGCGCGCccUGGacacgGCCGCCGuCUCg -3'
miRNA:   3'- ggGCGCGUGuaAUCg----CGGUGGUuGAG- -5'
6915 5' -54.8 NC_001875.2 + 11929 0.66 0.91764
Target:  5'- uUuuGCGCGC---GGCGC-GCCGACUg -3'
miRNA:   3'- -GggCGCGUGuaaUCGCGgUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 12310 0.68 0.822104
Target:  5'- gCCGUGUGCGUggucaacGCGCCcgGCCAGCg- -3'
miRNA:   3'- gGGCGCGUGUAau-----CGCGG--UGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 12789 0.72 0.603441
Target:  5'- gCCGCGCACAU--GCGCaCGCCGGa-- -3'
miRNA:   3'- gGGCGCGUGUAauCGCG-GUGGUUgag -5'
6915 5' -54.8 NC_001875.2 + 13043 0.66 0.899032
Target:  5'- --aGCGCGCAaauaagcgcuUUGggucGCGCCACCcuaAACUCg -3'
miRNA:   3'- gggCGCGUGU----------AAU----CGCGGUGG---UUGAG- -5'
6915 5' -54.8 NC_001875.2 + 13756 0.66 0.91764
Target:  5'- gUCGCGCACAaagUGGUGgCAgCAGuCUCc -3'
miRNA:   3'- gGGCGCGUGUa--AUCGCgGUgGUU-GAG- -5'
6915 5' -54.8 NC_001875.2 + 13910 0.66 0.928811
Target:  5'- gCgGCGCGCAc--GCcgGCCugCAGCUUg -3'
miRNA:   3'- gGgCGCGUGUaauCG--CGGugGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 14180 0.68 0.855437
Target:  5'- gCCGUGCGCAa-AGCGCCuACgUGACUUg -3'
miRNA:   3'- gGGCGCGUGUaaUCGCGG-UG-GUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 14228 0.68 0.855437
Target:  5'- gCCGUGCGCAa-AGCGCCuACgUGACUUg -3'
miRNA:   3'- gGGCGCGUGUaaUCGCGG-UG-GUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 14412 0.7 0.747406
Target:  5'- --aGCGUAUg--GGCGCCACCGGCa- -3'
miRNA:   3'- gggCGCGUGuaaUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 15217 0.66 0.899032
Target:  5'- gCUGCGCGaguacaAGCGCC-CCAACg- -3'
miRNA:   3'- gGGCGCGUguaa--UCGCGGuGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 15905 0.67 0.885418
Target:  5'- aCCCGCGCuACuUUGcCGgCACCGGCa- -3'
miRNA:   3'- -GGGCGCG-UGuAAUcGCgGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 16018 0.66 0.91764
Target:  5'- gCCGCGaggucaACGU---CGCCACCAACa- -3'
miRNA:   3'- gGGCGCg-----UGUAaucGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 16281 0.68 0.816843
Target:  5'- aCgCGUGCACAUgUAGCccaucuguggaauagGCCGCCAACc- -3'
miRNA:   3'- -GgGCGCGUGUA-AUCG---------------CGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 16524 0.66 0.899032
Target:  5'- aCCCGUGUucuCGaaaauGCGCCGCCAcgUCg -3'
miRNA:   3'- -GGGCGCGu--GUaau--CGCGGUGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 16858 0.72 0.603441
Target:  5'- gCCGUGUuaAUcGGCGCCGCCAGCg- -3'
miRNA:   3'- gGGCGCGugUAaUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 16879 0.7 0.747406
Target:  5'- cCCUGguuguaugcguaCGCGCAgcGGCGCCGCgAugUCg -3'
miRNA:   3'- -GGGC------------GCGUGUaaUCGCGGUGgUugAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.