miRNA display CGI


Results 101 - 120 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 39964 0.66 0.898374
Target:  5'- aCCCGCcgccGCACcagcaGGCGCCcugggggcccgugGCCGACUg -3'
miRNA:   3'- -GGGCG----CGUGuaa--UCGCGG-------------UGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 40089 0.72 0.624288
Target:  5'- gCCGCgGCGCugacGCGCCACUGGCUg -3'
miRNA:   3'- gGGCG-CGUGuaauCGCGGUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 40394 0.71 0.665986
Target:  5'- -aUGCGCGCccacGCGCCGCC-GCUCa -3'
miRNA:   3'- ggGCGCGUGuaauCGCGGUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 40606 0.72 0.624288
Target:  5'- aCgGCGC-CGUggugGGCGCCACCAcgcgcCUCg -3'
miRNA:   3'- gGgCGCGuGUAa---UCGCGGUGGUu----GAG- -5'
6915 5' -54.8 NC_001875.2 + 40711 0.72 0.603441
Target:  5'- gCCGCGCGC----GCGUCAUCAACUa -3'
miRNA:   3'- gGGCGCGUGuaauCGCGGUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 40863 0.66 0.91764
Target:  5'- -aCGCGCACcgcgGGCGCCAuCCugguGCa- -3'
miRNA:   3'- ggGCGCGUGuaa-UCGCGGU-GGu---UGag -5'
6915 5' -54.8 NC_001875.2 + 41171 0.71 0.655582
Target:  5'- aCUGUGCGCAgccccAGCGCCAgCGuagaGCUCg -3'
miRNA:   3'- gGGCGCGUGUaa---UCGCGGUgGU----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 41354 0.7 0.727487
Target:  5'- gCCGCGCGCAguuugaacGCGCgCugCAGCg- -3'
miRNA:   3'- gGGCGCGUGUaau-----CGCG-GugGUUGag -5'
6915 5' -54.8 NC_001875.2 + 41454 0.69 0.804328
Target:  5'- -aCGCGU---UUAGCGCCAUCGACg- -3'
miRNA:   3'- ggGCGCGuguAAUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 42061 0.74 0.531553
Target:  5'- uUCGCGCACGUgcacgAGCGCguCGCCGAC-Ca -3'
miRNA:   3'- gGGCGCGUGUAa----UCGCG--GUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 42571 0.67 0.892344
Target:  5'- gCCGCGC-CAggucGGCGCaCGCgcgcguCAGCUCg -3'
miRNA:   3'- gGGCGCGuGUaa--UCGCG-GUG------GUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 42802 0.68 0.847401
Target:  5'- gCCCGCGCACGggcaCGCUGaaugaCAACUUg -3'
miRNA:   3'- -GGGCGCGUGUaaucGCGGUg----GUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 42857 0.66 0.905479
Target:  5'- uCCgGCGCGCcgcaGGCGCaggucCGCCAGCg- -3'
miRNA:   3'- -GGgCGCGUGuaa-UCGCG-----GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 42960 0.66 0.928811
Target:  5'- gCCCGCGC-----AGCGC-GCCAACa- -3'
miRNA:   3'- -GGGCGCGuguaaUCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 43028 0.66 0.928811
Target:  5'- gCCGCGCGCcgcGGCG-CGCgGGCUa -3'
miRNA:   3'- gGGCGCGUGuaaUCGCgGUGgUUGAg -5'
6915 5' -54.8 NC_001875.2 + 43344 0.67 0.8768
Target:  5'- gCCGCGCACcacguacuuGCGCU-CCAgucGCUCg -3'
miRNA:   3'- gGGCGCGUGuaau-----CGCGGuGGU---UGAG- -5'
6915 5' -54.8 NC_001875.2 + 43695 0.68 0.813301
Target:  5'- gUCGUGCGCccacacaauuUUGGCGCCGCuCAGCa- -3'
miRNA:   3'- gGGCGCGUGu---------AAUCGCGGUG-GUUGag -5'
6915 5' -54.8 NC_001875.2 + 44643 0.66 0.928811
Target:  5'- aCCUGUGCGCGgucGCGCgucaagaucuCGCCAGC-Ca -3'
miRNA:   3'- -GGGCGCGUGUaauCGCG----------GUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 45430 0.71 0.676362
Target:  5'- gCCGCGCAgGUUGuuuuGCGCguCgAACUCg -3'
miRNA:   3'- gGGCGCGUgUAAU----CGCGguGgUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 45470 0.66 0.925564
Target:  5'- gCCCGCagccGCGCGUcUAGCGCggugccaaacaccacCACCAcacACUUg -3'
miRNA:   3'- -GGGCG----CGUGUA-AUCGCG---------------GUGGU---UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.