Results 1 - 20 of 297 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6915 | 5' | -54.8 | NC_001875.2 | + | 70213 | 0.73 | 0.582684 |
Target: 5'- aCUGgGCGCccgaGGCGCCGCCGACa- -3' miRNA: 3'- gGGCgCGUGuaa-UCGCGGUGGUUGag -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 42061 | 0.74 | 0.531553 |
Target: 5'- uUCGCGCACGUgcacgAGCGCguCGCCGAC-Ca -3' miRNA: 3'- gGGCGCGUGUAa----UCGCG--GUGGUUGaG- -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 35475 | 0.73 | 0.541665 |
Target: 5'- aCCUGCaGCGCAUguGCGCCAgCAACg- -3' miRNA: 3'- -GGGCG-CGUGUAauCGCGGUgGUUGag -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 98032 | 0.73 | 0.541665 |
Target: 5'- cCCCGCGCGCcgU-GCGCCgACgGGCa- -3' miRNA: 3'- -GGGCGCGUGuaAuCGCGG-UGgUUGag -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 83024 | 0.73 | 0.561048 |
Target: 5'- aCCGCGCGCAgcgaguGCGCCACgugaucgCGGCUg -3' miRNA: 3'- gGGCGCGUGUaau---CGCGGUG-------GUUGAg -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 62601 | 0.73 | 0.562073 |
Target: 5'- gCCCaGCGCGCcgUucGaCGCCGCCGugUCc -3' miRNA: 3'- -GGG-CGCGUGuaAu-C-GCGGUGGUugAG- -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 48826 | 0.73 | 0.572356 |
Target: 5'- cUCCGCGCGCuacGGCGCCGCUucaAGCcCg -3' miRNA: 3'- -GGGCGCGUGuaaUCGCGGUGG---UUGaG- -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 29876 | 0.73 | 0.572356 |
Target: 5'- gCCUGCGuCGCGUU--CGCCACCGGCg- -3' miRNA: 3'- -GGGCGC-GUGUAAucGCGGUGGUUGag -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 66237 | 0.73 | 0.572356 |
Target: 5'- aCCGgGUgaGCGUUucgcacuGCGCCGCCAACUg -3' miRNA: 3'- gGGCgCG--UGUAAu------CGCGGUGGUUGAg -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 33487 | 0.74 | 0.52151 |
Target: 5'- gCCGCGCGCugggguGCGCCaACCGAUUg -3' miRNA: 3'- gGGCGCGUGuaau--CGCGG-UGGUUGAg -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 81358 | 0.74 | 0.501653 |
Target: 5'- gCCGCGCGCAc--GCGCCgGCCGcgucGCUCc -3' miRNA: 3'- gGGCGCGUGUaauCGCGG-UGGU----UGAG- -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 85217 | 0.75 | 0.472515 |
Target: 5'- gCCGcCGCGCggUAGCGCCG-CAugUCg -3' miRNA: 3'- gGGC-GCGUGuaAUCGCGGUgGUugAG- -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 66068 | 0.83 | 0.167702 |
Target: 5'- gCCGCGCGCGUgcucGCccaGCCGCCGGCUCa -3' miRNA: 3'- gGGCGCGUGUAau--CG---CGGUGGUUGAG- -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 51531 | 0.8 | 0.233132 |
Target: 5'- -aCGCGCACAUUAGCGCUggcgaacacGCCGACg- -3' miRNA: 3'- ggGCGCGUGUAAUCGCGG---------UGGUUGag -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 36410 | 0.79 | 0.297085 |
Target: 5'- gCCGCGCACGcuggccGGCGCCGCgGugUCg -3' miRNA: 3'- gGGCGCGUGUaa----UCGCGGUGgUugAG- -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 124754 | 0.76 | 0.39073 |
Target: 5'- gCCGCGCACGUagUAGCuGCCGCCcGugUUg -3' miRNA: 3'- gGGCGCGUGUA--AUCG-CGGUGG-UugAG- -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 68573 | 0.76 | 0.425951 |
Target: 5'- gUCGCGCACcgcgUGGCGCCGCUGGC-Cg -3' miRNA: 3'- gGGCGCGUGua--AUCGCGGUGGUUGaG- -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 77428 | 0.75 | 0.444255 |
Target: 5'- -aCGCGCGCGUUGGUGCCA---ACUCu -3' miRNA: 3'- ggGCGCGUGUAAUCGCGGUgguUGAG- -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 71950 | 0.75 | 0.453571 |
Target: 5'- cUCCGCGCGCAgccuGuCGCCGCgaAGCUCg -3' miRNA: 3'- -GGGCGCGUGUaau-C-GCGGUGg-UUGAG- -5' |
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6915 | 5' | -54.8 | NC_001875.2 | + | 5299 | 0.75 | 0.459211 |
Target: 5'- gCCCGCGCccgacgaccacucCAUUGcGCGCUACCuGCUCg -3' miRNA: 3'- -GGGCGCGu------------GUAAU-CGCGGUGGuUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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