miRNA display CGI


Results 61 - 80 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 66237 0.73 0.572356
Target:  5'- aCCGgGUgaGCGUUucgcacuGCGCCGCCAACUg -3'
miRNA:   3'- gGGCgCG--UGUAAu------CGCGGUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 70213 0.73 0.582684
Target:  5'- aCUGgGCGCccgaGGCGCCGCCGACa- -3'
miRNA:   3'- gGGCgCGUGuaa-UCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 50128 0.72 0.645159
Target:  5'- -aCGCGCACG-UAGCGCUcuuCCAGCg- -3'
miRNA:   3'- ggGCGCGUGUaAUCGCGGu--GGUUGag -5'
6915 5' -54.8 NC_001875.2 + 113571 0.72 0.645159
Target:  5'- gUCGCGCACGgc-GCGCCauuggGCCAGCa- -3'
miRNA:   3'- gGGCGCGUGUaauCGCGG-----UGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 55924 0.72 0.645159
Target:  5'- aCCCGCGUAaugUGGUugGCCAgCAGCUUg -3'
miRNA:   3'- -GGGCGCGUguaAUCG--CGGUgGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 41171 0.71 0.655582
Target:  5'- aCUGUGCGCAgccccAGCGCCAgCGuagaGCUCg -3'
miRNA:   3'- gGGCGCGUGUaa---UCGCGGUgGU----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 37980 0.71 0.665986
Target:  5'- gCCUGCGCGCuc-AGCGCCGaCAAC-Cg -3'
miRNA:   3'- -GGGCGCGUGuaaUCGCGGUgGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 119058 0.71 0.665986
Target:  5'- -gCGUGCGCAUgugcgcGGCGCC-CCGGCUg -3'
miRNA:   3'- ggGCGCGUGUAa-----UCGCGGuGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 18705 0.71 0.676362
Target:  5'- -gCGUGCACAUUAacGUGCCGCaCAACa- -3'
miRNA:   3'- ggGCGCGUGUAAU--CGCGGUG-GUUGag -5'
6915 5' -54.8 NC_001875.2 + 45430 0.71 0.676362
Target:  5'- gCCGCGCAgGUUGuuuuGCGCguCgAACUCg -3'
miRNA:   3'- gGGCGCGUgUAAU----CGCGguGgUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 30455 0.72 0.645159
Target:  5'- gCUgGCGCGCGUUGcgcGCGUUugCAACUUg -3'
miRNA:   3'- -GGgCGCGUGUAAU---CGCGGugGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 17284 0.72 0.638899
Target:  5'- aUCCGcCGCACuggagcgucgugAGCGCCGCCGAUg- -3'
miRNA:   3'- -GGGC-GCGUGuaa---------UCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 32123 0.73 0.582684
Target:  5'- -gCGCGCACuugcgAGCGCCGCauagcGCUCa -3'
miRNA:   3'- ggGCGCGUGuaa--UCGCGGUGgu---UGAG- -5'
6915 5' -54.8 NC_001875.2 + 32781 0.73 0.582684
Target:  5'- cCUCGCGCgGCGUgggcgGGCGCCgcGCCGgcaaGCUCg -3'
miRNA:   3'- -GGGCGCG-UGUAa----UCGCGG--UGGU----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 16858 0.72 0.603441
Target:  5'- gCCGUGUuaAUcGGCGCCGCCAGCg- -3'
miRNA:   3'- gGGCGCGugUAaUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 40711 0.72 0.603441
Target:  5'- gCCGCGCGC----GCGUCAUCAACUa -3'
miRNA:   3'- gGGCGCGUGuaauCGCGGUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 109858 0.72 0.607606
Target:  5'- gCUGCGCGCGUuugccaagcuggcgcUGGCGCCGCCca-UCc -3'
miRNA:   3'- gGGCGCGUGUA---------------AUCGCGGUGGuugAG- -5'
6915 5' -54.8 NC_001875.2 + 40089 0.72 0.624288
Target:  5'- gCCGCgGCGCugacGCGCCACUGGCUg -3'
miRNA:   3'- gGGCG-CGUGuaauCGCGGUGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 40606 0.72 0.624288
Target:  5'- aCgGCGC-CGUggugGGCGCCACCAcgcgcCUCg -3'
miRNA:   3'- gGgCGCGuGUAa---UCGCGGUGGUu----GAG- -5'
6915 5' -54.8 NC_001875.2 + 110814 0.72 0.630549
Target:  5'- gCCGCGCAgGUggacgcgcugguGCGCCGCgGACUg -3'
miRNA:   3'- gGGCGCGUgUAau----------CGCGGUGgUUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.