miRNA display CGI


Results 101 - 120 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 4548 0.7 0.757212
Target:  5'- uCCUGCGguUug-GGgGCCGCCAGCa- -3'
miRNA:   3'- -GGGCGCguGuaaUCgCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 18301 0.7 0.757212
Target:  5'- uUCGCGCGCuuAUUGGCcCCGCCGccGCUUu -3'
miRNA:   3'- gGGCGCGUG--UAAUCGcGGUGGU--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 62249 0.7 0.757212
Target:  5'- gCCGCGUAa---AGCGCCACacguACUCc -3'
miRNA:   3'- gGGCGCGUguaaUCGCGGUGgu--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 100646 0.69 0.766904
Target:  5'- -gCGUGCGCGUcAGCccCCACCAAUUCc -3'
miRNA:   3'- ggGCGCGUGUAaUCGc-GGUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 118387 0.69 0.766904
Target:  5'- aCCUGUGCAaggaGGCGuCCGCCGACcCg -3'
miRNA:   3'- -GGGCGCGUguaaUCGC-GGUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 111048 0.7 0.707226
Target:  5'- gCCCGCGCACugc-GCGUCGaCGGCUUc -3'
miRNA:   3'- -GGGCGCGUGuaauCGCGGUgGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 51971 0.71 0.696991
Target:  5'- aCgCGCGCGCGUggaccacGCGCCACCccAACa- -3'
miRNA:   3'- -GgGCGCGUGUAau-----CGCGGUGG--UUGag -5'
6915 5' -54.8 NC_001875.2 + 50128 0.72 0.645159
Target:  5'- -aCGCGCACG-UAGCGCUcuuCCAGCg- -3'
miRNA:   3'- ggGCGCGUGUaAUCGCGGu--GGUUGag -5'
6915 5' -54.8 NC_001875.2 + 113571 0.72 0.645159
Target:  5'- gUCGCGCACGgc-GCGCCauuggGCCAGCa- -3'
miRNA:   3'- gGGCGCGUGUaauCGCGG-----UGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 55924 0.72 0.645159
Target:  5'- aCCCGCGUAaugUGGUugGCCAgCAGCUUg -3'
miRNA:   3'- -GGGCGCGUguaAUCG--CGGUgGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 41171 0.71 0.655582
Target:  5'- aCUGUGCGCAgccccAGCGCCAgCGuagaGCUCg -3'
miRNA:   3'- gGGCGCGUGUaa---UCGCGGUgGU----UGAG- -5'
6915 5' -54.8 NC_001875.2 + 37980 0.71 0.665986
Target:  5'- gCCUGCGCGCuc-AGCGCCGaCAAC-Cg -3'
miRNA:   3'- -GGGCGCGUGuaaUCGCGGUgGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 119058 0.71 0.665986
Target:  5'- -gCGUGCGCAUgugcgcGGCGCC-CCGGCUg -3'
miRNA:   3'- ggGCGCGUGUAa-----UCGCGGuGGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 18705 0.71 0.676362
Target:  5'- -gCGUGCACAUUAacGUGCCGCaCAACa- -3'
miRNA:   3'- ggGCGCGUGUAAU--CGCGGUG-GUUGag -5'
6915 5' -54.8 NC_001875.2 + 45430 0.71 0.676362
Target:  5'- gCCGCGCAgGUUGuuuuGCGCguCgAACUCg -3'
miRNA:   3'- gGGCGCGUgUAAU----CGCGguGgUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 5218 0.71 0.6867
Target:  5'- gCCCGaCGCcacgaucgACAU--GCGCCACCAGCcCa -3'
miRNA:   3'- -GGGC-GCG--------UGUAauCGCGGUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 10397 0.71 0.6867
Target:  5'- gCCGcCGCGCcgUGGCGCggCACCcGCUg -3'
miRNA:   3'- gGGC-GCGUGuaAUCGCG--GUGGuUGAg -5'
6915 5' -54.8 NC_001875.2 + 32917 0.71 0.6867
Target:  5'- gUCGCGCACGcgcaaccGCGCCGCgAGCUa -3'
miRNA:   3'- gGGCGCGUGUaau----CGCGGUGgUUGAg -5'
6915 5' -54.8 NC_001875.2 + 5938 0.71 0.696991
Target:  5'- gCCGCGCAgGUgGGCGCgGCCucGCa- -3'
miRNA:   3'- gGGCGCGUgUAaUCGCGgUGGu-UGag -5'
6915 5' -54.8 NC_001875.2 + 62477 0.71 0.696991
Target:  5'- aCgGCGCGCAgcgGGCGCaCGCCGcugACUg -3'
miRNA:   3'- gGgCGCGUGUaa-UCGCG-GUGGU---UGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.