miRNA display CGI


Results 121 - 140 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 38617 0.69 0.79427
Target:  5'- --aGCGCACcgcugUGGaaaaccaguuuaaCGCCGCCGACUCg -3'
miRNA:   3'- gggCGCGUGua---AUC-------------GCGGUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 117890 0.69 0.795192
Target:  5'- uUuuGCGCACAUguacuGUGCCGaCAugUCa -3'
miRNA:   3'- -GggCGCGUGUAau---CGCGGUgGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 92521 0.7 0.757212
Target:  5'- gCUCGUGCGCGcccGGCGCguuuucucugcaCACCAACUUg -3'
miRNA:   3'- -GGGCGCGUGUaa-UCGCG------------GUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 60386 0.7 0.751341
Target:  5'- -gCGCGCACGaUGGCcgaagagaacguguuGCCgccGCCAACUCu -3'
miRNA:   3'- ggGCGCGUGUaAUCG---------------CGG---UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 120674 0.7 0.747406
Target:  5'- aCgGCGCGCugcuguGCGCCAUCGAC-Cg -3'
miRNA:   3'- gGgCGCGUGuaau--CGCGGUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 18705 0.71 0.676362
Target:  5'- -gCGUGCACAUUAacGUGCCGCaCAACa- -3'
miRNA:   3'- ggGCGCGUGUAAU--CGCGGUG-GUUGag -5'
6915 5' -54.8 NC_001875.2 + 45430 0.71 0.676362
Target:  5'- gCCGCGCAgGUUGuuuuGCGCguCgAACUCg -3'
miRNA:   3'- gGGCGCGUgUAAU----CGCGguGgUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 5218 0.71 0.6867
Target:  5'- gCCCGaCGCcacgaucgACAU--GCGCCACCAGCcCa -3'
miRNA:   3'- -GGGC-GCG--------UGUAauCGCGGUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 10397 0.71 0.6867
Target:  5'- gCCGcCGCGCcgUGGCGCggCACCcGCUg -3'
miRNA:   3'- gGGC-GCGUGuaAUCGCG--GUGGuUGAg -5'
6915 5' -54.8 NC_001875.2 + 32917 0.71 0.6867
Target:  5'- gUCGCGCACGcgcaaccGCGCCGCgAGCUa -3'
miRNA:   3'- gGGCGCGUGUaau----CGCGGUGgUUGAg -5'
6915 5' -54.8 NC_001875.2 + 5938 0.71 0.696991
Target:  5'- gCCGCGCAgGUgGGCGCgGCCucGCa- -3'
miRNA:   3'- gGGCGCGUgUAaUCGCGgUGGu-UGag -5'
6915 5' -54.8 NC_001875.2 + 62477 0.71 0.696991
Target:  5'- aCgGCGCGCAgcgGGCGCaCGCCGcugACUg -3'
miRNA:   3'- gGgCGCGUGUaa-UCGCG-GUGGU---UGAg -5'
6915 5' -54.8 NC_001875.2 + 75129 0.69 0.795192
Target:  5'- aCCGCGUACGUUucGCGCgGCCucGGC-Ca -3'
miRNA:   3'- gGGCGCGUGUAAu-CGCGgUGG--UUGaG- -5'
6915 5' -54.8 NC_001875.2 + 51971 0.71 0.696991
Target:  5'- aCgCGCGCGCGUggaccacGCGCCACCccAACa- -3'
miRNA:   3'- -GgGCGCGUGUAau-----CGCGGUGG--UUGag -5'
6915 5' -54.8 NC_001875.2 + 111048 0.7 0.707226
Target:  5'- gCCCGCGCACugc-GCGUCGaCGGCUUc -3'
miRNA:   3'- -GGGCGCGUGuaauCGCGGUgGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 31698 0.7 0.707226
Target:  5'- aCCGC-CGCuUgcGCGCCGCCGGCg- -3'
miRNA:   3'- gGGCGcGUGuAauCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 49586 0.7 0.717394
Target:  5'- gCUGCGCGCcgacgAGCGCUACCAccaGCg- -3'
miRNA:   3'- gGGCGCGUGuaa--UCGCGGUGGU---UGag -5'
6915 5' -54.8 NC_001875.2 + 130431 0.7 0.717394
Target:  5'- aCCGCuaaaaauaGCACAccagGGCGCCGCUGACg- -3'
miRNA:   3'- gGGCG--------CGUGUaa--UCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 66775 0.7 0.746419
Target:  5'- gCCCaGCGU--GUUGGCGCCGCCGuuguaaaACUUu -3'
miRNA:   3'- -GGG-CGCGugUAAUCGCGGUGGU-------UGAG- -5'
6915 5' -54.8 NC_001875.2 + 14412 0.7 0.747406
Target:  5'- --aGCGUAUg--GGCGCCACCGGCa- -3'
miRNA:   3'- gggCGCGUGuaaUCGCGGUGGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.