miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 20089 0.8 0.233132
Target:  5'- gUCgGCGCACGUgaugGGCGCC-CCAAUUCg -3'
miRNA:   3'- -GGgCGCGUGUAa---UCGCGGuGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 7015 0.73 0.582684
Target:  5'- gCCgGCgGCGCGUaucugaccuuUAGCGCCGCCAcGCUg -3'
miRNA:   3'- -GGgCG-CGUGUA----------AUCGCGGUGGU-UGAg -5'
6915 5' -54.8 NC_001875.2 + 74508 0.73 0.586825
Target:  5'- gCCGCGCGCAgcgcugccgcaacaaUU-GCGUCGCCGACg- -3'
miRNA:   3'- gGGCGCGUGU---------------AAuCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 129390 0.66 0.928811
Target:  5'- aCCCGCGCGCaAUUAcGUGCaGCUAAa-- -3'
miRNA:   3'- -GGGCGCGUG-UAAU-CGCGgUGGUUgag -5'
6915 5' -54.8 NC_001875.2 + 52085 0.77 0.349467
Target:  5'- gUuuGCGCACAUgcuCGCCACCAGCg- -3'
miRNA:   3'- -GggCGCGUGUAaucGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 63903 0.77 0.382227
Target:  5'- --aGCGCGCcgUGGCGCCGCCGcaUCa -3'
miRNA:   3'- gggCGCGUGuaAUCGCGGUGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 2309 0.76 0.416077
Target:  5'- gCCGCGCGCAgcucGGCcagcucgGCCugCAGCUCc -3'
miRNA:   3'- gGGCGCGUGUaa--UCG-------CGGugGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 86568 0.75 0.462992
Target:  5'- gCCGaaaaGCACAUUAaccGCGCCAuCCAGCUg -3'
miRNA:   3'- gGGCg---CGUGUAAU---CGCGGU-GGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 53528 0.75 0.482135
Target:  5'- uUgGCGCACGUcguGCGCUACCAGCg- -3'
miRNA:   3'- gGgCGCGUGUAau-CGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 110589 0.73 0.572356
Target:  5'- gCCGCGCGC----GCGCCuggACCAGCUUc -3'
miRNA:   3'- gGGCGCGUGuaauCGCGG---UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 9137 0.74 0.501653
Target:  5'- aCUCGCGCGCcaGUUcgguguccacGGCGCaCGCCAACUUu -3'
miRNA:   3'- -GGGCGCGUG--UAA----------UCGCG-GUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 62380 0.75 0.482135
Target:  5'- -aCGCGCACGUuguuUAGCGUgGCCGGCg- -3'
miRNA:   3'- ggGCGCGUGUA----AUCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 30943 0.79 0.263538
Target:  5'- cUCCGCGCGCugcGGCGCCcggACCGGCUUa -3'
miRNA:   3'- -GGGCGCGUGuaaUCGCGG---UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 18234 0.74 0.52151
Target:  5'- gCCGC-CGCGgcc-CGCCGCCGACUCg -3'
miRNA:   3'- gGGCGcGUGUaaucGCGGUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 64235 0.79 0.297085
Target:  5'- gCCGCGCACGUUccaaacGGUGCaCACCGACg- -3'
miRNA:   3'- gGGCGCGUGUAA------UCGCG-GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 46610 0.75 0.466789
Target:  5'- aCCCGCGCucgucgACAUgcGGCGCUACCGcgcggcggcccgucgGCUCa -3'
miRNA:   3'- -GGGCGCG------UGUAa-UCGCGGUGGU---------------UGAG- -5'
6915 5' -54.8 NC_001875.2 + 120961 0.74 0.531553
Target:  5'- -aCGuUGCGCGgcAGCGCCACCGACg- -3'
miRNA:   3'- ggGC-GCGUGUaaUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 109006 0.73 0.582684
Target:  5'- -aCGCGUACGUc-GUGCCGCCGACg- -3'
miRNA:   3'- ggGCGCGUGUAauCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 48460 0.78 0.330793
Target:  5'- aCCCGCGaUACuguuugcaaguguUUAGCGCCGCCGACg- -3'
miRNA:   3'- -GGGCGC-GUGu------------AAUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 131062 0.76 0.399357
Target:  5'- gCCGCGCACAgcuUUAGCGCCgacgaaAUCAACg- -3'
miRNA:   3'- gGGCGCGUGU---AAUCGCGG------UGGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.