miRNA display CGI


Results 41 - 60 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 83588 0.72 0.645159
Target:  5'- uCCCG-GCGg---GGCGCCGCCGuaGCUCa -3'
miRNA:   3'- -GGGCgCGUguaaUCGCGGUGGU--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 7015 0.73 0.582684
Target:  5'- gCCgGCgGCGCGUaucugaccuuUAGCGCCGCCAcGCUg -3'
miRNA:   3'- -GGgCG-CGUGUA----------AUCGCGGUGGU-UGAg -5'
6915 5' -54.8 NC_001875.2 + 64235 0.79 0.297085
Target:  5'- gCCGCGCACGUUccaaacGGUGCaCACCGACg- -3'
miRNA:   3'- gGGCGCGUGUAA------UCGCG-GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 65811 0.72 0.645159
Target:  5'- gCCUGCGCgGCGccaAGCGCUugCAGCUg -3'
miRNA:   3'- -GGGCGCG-UGUaa-UCGCGGugGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 30943 0.79 0.263538
Target:  5'- cUCCGCGCGCugcGGCGCCcggACCGGCUUa -3'
miRNA:   3'- -GGGCGCGUGuaaUCGCGG---UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 5010 0.7 0.757212
Target:  5'- aCuuGUGCACuuu-GCGCCGCCucgguCUCc -3'
miRNA:   3'- -GggCGCGUGuaauCGCGGUGGuu---GAG- -5'
6915 5' -54.8 NC_001875.2 + 52085 0.77 0.349467
Target:  5'- gUuuGCGCACAUgcuCGCCACCAGCg- -3'
miRNA:   3'- -GggCGCGUGUAaucGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 16879 0.7 0.747406
Target:  5'- cCCUGguuguaugcguaCGCGCAgcGGCGCCGCgAugUCg -3'
miRNA:   3'- -GGGC------------GCGUGUaaUCGCGGUGgUugAG- -5'
6915 5' -54.8 NC_001875.2 + 49137 0.7 0.717394
Target:  5'- cCCUGCGCgACuggcGGCGCUACCAGgaCg -3'
miRNA:   3'- -GGGCGCG-UGuaa-UCGCGGUGGUUgaG- -5'
6915 5' -54.8 NC_001875.2 + 21570 0.7 0.707226
Target:  5'- gCCCGCGCGCuc---CGCgGCCAGC-Cg -3'
miRNA:   3'- -GGGCGCGUGuaaucGCGgUGGUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 98365 0.71 0.6867
Target:  5'- cCCCaGCGCGCGgc-GCGCCACU--UUCg -3'
miRNA:   3'- -GGG-CGCGUGUaauCGCGGUGGuuGAG- -5'
6915 5' -54.8 NC_001875.2 + 40394 0.71 0.665986
Target:  5'- -aUGCGCGCccacGCGCCGCC-GCUCa -3'
miRNA:   3'- ggGCGCGUGuaauCGCGGUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 2942 0.71 0.665986
Target:  5'- aCCGCGCGC--UGGCGC-GCUuGCUCg -3'
miRNA:   3'- gGGCGCGUGuaAUCGCGgUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 122158 0.72 0.623244
Target:  5'- -aCGCGCACAauUUuuucgacAGCGCCGCgCAGCUg -3'
miRNA:   3'- ggGCGCGUGU--AA-------UCGCGGUG-GUUGAg -5'
6915 5' -54.8 NC_001875.2 + 73025 0.72 0.603441
Target:  5'- -aCGCGCGCAUUuccgcguGCaGCUggGCCAACUCg -3'
miRNA:   3'- ggGCGCGUGUAAu------CG-CGG--UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 21196 0.72 0.603441
Target:  5'- uCgCGCgGCACGgccAGCGCCACCAGgUUg -3'
miRNA:   3'- -GgGCG-CGUGUaa-UCGCGGUGGUUgAG- -5'
6915 5' -54.8 NC_001875.2 + 74508 0.73 0.586825
Target:  5'- gCCGCGCGCAgcgcugccgcaacaaUU-GCGUCGCCGACg- -3'
miRNA:   3'- gGGCGCGUGU---------------AAuCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 18234 0.74 0.52151
Target:  5'- gCCGC-CGCGgcc-CGCCGCCGACUCg -3'
miRNA:   3'- gGGCGcGUGUaaucGCGGUGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 53528 0.75 0.482135
Target:  5'- uUgGCGCACGUcguGCGCUACCAGCg- -3'
miRNA:   3'- gGgCGCGUGUAau-CGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 2309 0.76 0.416077
Target:  5'- gCCGCGCGCAgcucGGCcagcucgGCCugCAGCUCc -3'
miRNA:   3'- gGGCGCGUGUaa--UCG-------CGGugGUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.