miRNA display CGI


Results 61 - 80 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 2942 0.71 0.665986
Target:  5'- aCCGCGCGC--UGGCGC-GCUuGCUCg -3'
miRNA:   3'- gGGCGCGUGuaAUCGCGgUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 66108 0.71 0.67429
Target:  5'- gCCCGCGCgGCGggcggcgaggcGGCGCCGCCcGCg- -3'
miRNA:   3'- -GGGCGCG-UGUaa---------UCGCGGUGGuUGag -5'
6915 5' -54.8 NC_001875.2 + 63903 0.77 0.382227
Target:  5'- --aGCGCGCcgUGGCGCCGCCGcaUCa -3'
miRNA:   3'- gggCGCGUGuaAUCGCGGUGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 86568 0.75 0.462992
Target:  5'- gCCGaaaaGCACAUUAaccGCGCCAuCCAGCUg -3'
miRNA:   3'- gGGCg---CGUGUAAU---CGCGGU-GGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 124765 0.74 0.491849
Target:  5'- gUCUGCGCACAggccggUGGCGUCGCCGcaGCg- -3'
miRNA:   3'- -GGGCGCGUGUa-----AUCGCGGUGGU--UGag -5'
6915 5' -54.8 NC_001875.2 + 120961 0.74 0.531553
Target:  5'- -aCGuUGCGCGgcAGCGCCACCGACg- -3'
miRNA:   3'- ggGC-GCGUGUaaUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 12789 0.72 0.603441
Target:  5'- gCCGCGCACAU--GCGCaCGCCGGa-- -3'
miRNA:   3'- gGGCGCGUGUAauCGCG-GUGGUUgag -5'
6915 5' -54.8 NC_001875.2 + 33858 0.72 0.603441
Target:  5'- gUCGCGCACcgU-GCGCgGCCGGCa- -3'
miRNA:   3'- gGGCGCGUGuaAuCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 75385 0.72 0.603441
Target:  5'- -aCGCGCGCGgacccCGCCACCGGcCUCa -3'
miRNA:   3'- ggGCGCGUGUaauc-GCGGUGGUU-GAG- -5'
6915 5' -54.8 NC_001875.2 + 3227 0.72 0.624288
Target:  5'- gCgUGgGCGCGUUGGCGUUguuggACCGGCUCa -3'
miRNA:   3'- -GgGCgCGUGUAAUCGCGG-----UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 81850 0.68 0.839162
Target:  5'- aCCGCG-ACA--AGCGCCGCguCAGCUa -3'
miRNA:   3'- gGGCGCgUGUaaUCGCGGUG--GUUGAg -5'
6915 5' -54.8 NC_001875.2 + 93080 0.68 0.830727
Target:  5'- -aUGCGguCuu--GCGCCugCAGCUCa -3'
miRNA:   3'- ggGCGCguGuaauCGCGGugGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 112824 0.71 0.696991
Target:  5'- gCCGCGCACGUgcaaAGCGCgUugCGGCc- -3'
miRNA:   3'- gGGCGCGUGUAa---UCGCG-GugGUUGag -5'
6915 5' -54.8 NC_001875.2 + 113827 0.7 0.713336
Target:  5'- gUCGCGCGCG-UAGCGCC-CCAugaacauuucgauCUCa -3'
miRNA:   3'- gGGCGCGUGUaAUCGCGGuGGUu------------GAG- -5'
6915 5' -54.8 NC_001875.2 + 16879 0.7 0.747406
Target:  5'- cCCUGguuguaugcguaCGCGCAgcGGCGCCGCgAugUCg -3'
miRNA:   3'- -GGGC------------GCGUGUaaUCGCGGUGgUugAG- -5'
6915 5' -54.8 NC_001875.2 + 5010 0.7 0.757212
Target:  5'- aCuuGUGCACuuu-GCGCCGCCucgguCUCc -3'
miRNA:   3'- -GggCGCGUGuaauCGCGGUGGuu---GAG- -5'
6915 5' -54.8 NC_001875.2 + 52715 0.69 0.776471
Target:  5'- gCCCGC-CGCGgcgccCGCCGCCGACa- -3'
miRNA:   3'- -GGGCGcGUGUaauc-GCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 111192 0.69 0.785903
Target:  5'- -gCGCGCugGgcGGCGCgCGCCGuuuuuuguuGCUCa -3'
miRNA:   3'- ggGCGCGugUaaUCGCG-GUGGU---------UGAG- -5'
6915 5' -54.8 NC_001875.2 + 102028 0.68 0.813301
Target:  5'- -gCGUGC-CGUUGacccauGCGCCGCCAGCg- -3'
miRNA:   3'- ggGCGCGuGUAAU------CGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 81474 0.68 0.830727
Target:  5'- gUCCGCGguCAgUGGCGCgcgcggcccgaCGCCAACg- -3'
miRNA:   3'- -GGGCGCguGUaAUCGCG-----------GUGGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.