miRNA display CGI


Results 81 - 100 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 85615 0.7 0.707226
Target:  5'- -aCGCGCuugugauauCGUUcgcAGCGCCGCCA-CUCa -3'
miRNA:   3'- ggGCGCGu--------GUAA---UCGCGGUGGUuGAG- -5'
6915 5' -54.8 NC_001875.2 + 101167 0.7 0.717394
Target:  5'- gCCGUGCGCG-UGGCGCUggucaauuacguGCCGGCg- -3'
miRNA:   3'- gGGCGCGUGUaAUCGCGG------------UGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 47485 0.7 0.747406
Target:  5'- gCCGCGCACcuaccGGCGCaGCC-GCUCc -3'
miRNA:   3'- gGGCGCGUGuaa--UCGCGgUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 38058 0.69 0.766904
Target:  5'- gCCCGCGCGacuu-GCGCCGuaaaCGGCUUg -3'
miRNA:   3'- -GGGCGCGUguaauCGCGGUg---GUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 29395 0.69 0.785903
Target:  5'- uUCCGgGCgGCAagGGCGCCAacCCGgcGCUCg -3'
miRNA:   3'- -GGGCgCG-UGUaaUCGCGGU--GGU--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 102028 0.68 0.813301
Target:  5'- -gCGUGC-CGUUGacccauGCGCCGCCAGCg- -3'
miRNA:   3'- ggGCGCGuGUAAU------CGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 81474 0.68 0.830727
Target:  5'- gUCCGCGguCAgUGGCGCgcgcggcccgaCGCCAACg- -3'
miRNA:   3'- -GGGCGCguGUaAUCGCG-----------GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 3227 0.72 0.624288
Target:  5'- gCgUGgGCGCGUUGGCGUUguuggACCGGCUCa -3'
miRNA:   3'- -GgGCgCGUGUAAUCGCGG-----UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 75385 0.72 0.603441
Target:  5'- -aCGCGCGCGgacccCGCCACCGGcCUCa -3'
miRNA:   3'- ggGCGCGUGUaauc-GCGGUGGUU-GAG- -5'
6915 5' -54.8 NC_001875.2 + 33858 0.72 0.603441
Target:  5'- gUCGCGCACcgU-GCGCgGCCGGCa- -3'
miRNA:   3'- gGGCGCGUGuaAuCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 14180 0.68 0.855437
Target:  5'- gCCGUGCGCAa-AGCGCCuACgUGACUUg -3'
miRNA:   3'- gGGCGCGUGUaaUCGCGG-UG-GUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 89615 0.67 0.86249
Target:  5'- gCgCGUGCACAUUGacaagcaccacgcGUGCCGCCGcgcGCUa -3'
miRNA:   3'- -GgGCGCGUGUAAU-------------CGCGGUGGU---UGAg -5'
6915 5' -54.8 NC_001875.2 + 21954 0.67 0.870873
Target:  5'- uUCGCgGCGCGgggaugggcGGCGCCagcGCCAGCUUg -3'
miRNA:   3'- gGGCG-CGUGUaa-------UCGCGG---UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 55120 0.67 0.885418
Target:  5'- gUCCGCGuCACcgacgcucAGCGCgACCGACg- -3'
miRNA:   3'- -GGGCGC-GUGuaa-----UCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 47387 0.67 0.892344
Target:  5'- -aCGCGCAUcaUGGUcuaccGCCGCCGccGCUCc -3'
miRNA:   3'- ggGCGCGUGuaAUCG-----CGGUGGU--UGAG- -5'
6915 5' -54.8 NC_001875.2 + 63903 0.77 0.382227
Target:  5'- --aGCGCGCcgUGGCGCCGCCGcaUCa -3'
miRNA:   3'- gggCGCGUGuaAUCGCGGUGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 86568 0.75 0.462992
Target:  5'- gCCGaaaaGCACAUUAaccGCGCCAuCCAGCUg -3'
miRNA:   3'- gGGCg---CGUGUAAU---CGCGGU-GGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 124765 0.74 0.491849
Target:  5'- gUCUGCGCACAggccggUGGCGUCGCCGcaGCg- -3'
miRNA:   3'- -GGGCGCGUGUa-----AUCGCGGUGGU--UGag -5'
6915 5' -54.8 NC_001875.2 + 120961 0.74 0.531553
Target:  5'- -aCGuUGCGCGgcAGCGCCACCGACg- -3'
miRNA:   3'- ggGC-GCGUGUaaUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 12789 0.72 0.603441
Target:  5'- gCCGCGCACAU--GCGCaCGCCGGa-- -3'
miRNA:   3'- gGGCGCGUGUAauCGCG-GUGGUUgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.