miRNA display CGI


Results 101 - 120 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6915 5' -54.8 NC_001875.2 + 98044 0.67 0.87826
Target:  5'- -aCGCGUguucgGCAUgcugaucgAGCGCCAC-AACUCg -3'
miRNA:   3'- ggGCGCG-----UGUAa-------UCGCGGUGgUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 59209 0.67 0.892344
Target:  5'- aCCCGCGC-CGUUuggcGUGCCGCaGGC-Cg -3'
miRNA:   3'- -GGGCGCGuGUAAu---CGCGGUGgUUGaG- -5'
6915 5' -54.8 NC_001875.2 + 79901 0.66 0.899032
Target:  5'- gUCGCGCcCAaagUAGCGCCGCacGCUg -3'
miRNA:   3'- gGGCGCGuGUa--AUCGCGGUGguUGAg -5'
6915 5' -54.8 NC_001875.2 + 19475 0.66 0.905479
Target:  5'- gCUCGgGCGC--UGGUGCUGgCGGCUCg -3'
miRNA:   3'- -GGGCgCGUGuaAUCGCGGUgGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 98632 0.66 0.905479
Target:  5'- gCCCGCGCccGCGUU--UGCCGgCAGCg- -3'
miRNA:   3'- -GGGCGCG--UGUAAucGCGGUgGUUGag -5'
6915 5' -54.8 NC_001875.2 + 38058 0.69 0.766904
Target:  5'- gCCCGCGCGacuu-GCGCCGuaaaCGGCUUg -3'
miRNA:   3'- -GGGCGCGUguaauCGCGGUg---GUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 47485 0.7 0.747406
Target:  5'- gCCGCGCACcuaccGGCGCaGCC-GCUCc -3'
miRNA:   3'- gGGCGCGUGuaa--UCGCGgUGGuUGAG- -5'
6915 5' -54.8 NC_001875.2 + 63903 0.77 0.382227
Target:  5'- --aGCGCGCcgUGGCGCCGCCGcaUCa -3'
miRNA:   3'- gggCGCGUGuaAUCGCGGUGGUugAG- -5'
6915 5' -54.8 NC_001875.2 + 86568 0.75 0.462992
Target:  5'- gCCGaaaaGCACAUUAaccGCGCCAuCCAGCUg -3'
miRNA:   3'- gGGCg---CGUGUAAU---CGCGGU-GGUUGAg -5'
6915 5' -54.8 NC_001875.2 + 124765 0.74 0.491849
Target:  5'- gUCUGCGCACAggccggUGGCGUCGCCGcaGCg- -3'
miRNA:   3'- -GGGCGCGUGUa-----AUCGCGGUGGU--UGag -5'
6915 5' -54.8 NC_001875.2 + 120961 0.74 0.531553
Target:  5'- -aCGuUGCGCGgcAGCGCCACCGACg- -3'
miRNA:   3'- ggGC-GCGUGUaaUCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 12789 0.72 0.603441
Target:  5'- gCCGCGCACAU--GCGCaCGCCGGa-- -3'
miRNA:   3'- gGGCGCGUGUAauCGCG-GUGGUUgag -5'
6915 5' -54.8 NC_001875.2 + 33858 0.72 0.603441
Target:  5'- gUCGCGCACcgU-GCGCgGCCGGCa- -3'
miRNA:   3'- gGGCGCGUGuaAuCGCGgUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 75385 0.72 0.603441
Target:  5'- -aCGCGCGCGgacccCGCCACCGGcCUCa -3'
miRNA:   3'- ggGCGCGUGUaauc-GCGGUGGUU-GAG- -5'
6915 5' -54.8 NC_001875.2 + 3227 0.72 0.624288
Target:  5'- gCgUGgGCGCGUUGGCGUUguuggACCGGCUCa -3'
miRNA:   3'- -GgGCgCGUGUAAUCGCGG-----UGGUUGAG- -5'
6915 5' -54.8 NC_001875.2 + 36493 0.71 0.665986
Target:  5'- aCgCGUGCACGU--GCGCCGCCggUUa -3'
miRNA:   3'- -GgGCGCGUGUAauCGCGGUGGuuGAg -5'
6915 5' -54.8 NC_001875.2 + 50516 0.71 0.673253
Target:  5'- gCCGCGCgGCAcgaugacgaggaggaGGCGCCGCCGGCg- -3'
miRNA:   3'- gGGCGCG-UGUaa-------------UCGCGGUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 87373 0.71 0.696991
Target:  5'- gCCgGUGCACGacUUGGCGCacugCGCCGACg- -3'
miRNA:   3'- -GGgCGCGUGU--AAUCGCG----GUGGUUGag -5'
6915 5' -54.8 NC_001875.2 + 85615 0.7 0.707226
Target:  5'- -aCGCGCuugugauauCGUUcgcAGCGCCGCCA-CUCa -3'
miRNA:   3'- ggGCGCGu--------GUAA---UCGCGGUGGUuGAG- -5'
6915 5' -54.8 NC_001875.2 + 101167 0.7 0.717394
Target:  5'- gCCGUGCGCG-UGGCGCUggucaauuacguGCCGGCg- -3'
miRNA:   3'- gGGCGCGUGUaAUCGCGG------------UGGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.