miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6918 3' -52.2 NC_001875.2 + 114238 0.66 0.973403
Target:  5'- -cGUCGCu--GGAcGCGGGCCG-Ca- -3'
miRNA:   3'- guCAGCGuuuUCUuCGUCCGGCaGag -5'
6918 3' -52.2 NC_001875.2 + 13475 0.66 0.970481
Target:  5'- aGGUCGCAcucguacAGCGGGCCGcCg- -3'
miRNA:   3'- gUCAGCGUuuucu--UCGUCCGGCaGag -5'
6918 3' -52.2 NC_001875.2 + 90367 0.66 0.967335
Target:  5'- cCGG-CGCAuacu--GCAGGCCGggCUCg -3'
miRNA:   3'- -GUCaGCGUuuucuuCGUCCGGCa-GAG- -5'
6918 3' -52.2 NC_001875.2 + 128133 0.66 0.967335
Target:  5'- aCAGuUUGCu---GAAGCAGGaCCGUUUa -3'
miRNA:   3'- -GUC-AGCGuuuuCUUCGUCC-GGCAGAg -5'
6918 3' -52.2 NC_001875.2 + 73453 0.66 0.960347
Target:  5'- gUAGUCGCAGAuGAAcCAG-CCGUCg- -3'
miRNA:   3'- -GUCAGCGUUUuCUUcGUCcGGCAGag -5'
6918 3' -52.2 NC_001875.2 + 3978 0.67 0.95239
Target:  5'- aGGUCGUAcAAAcAAGCAGGuCCuUCUCg -3'
miRNA:   3'- gUCAGCGU-UUUcUUCGUCC-GGcAGAG- -5'
6918 3' -52.2 NC_001875.2 + 66099 0.67 0.948036
Target:  5'- aGGUCGCucguGAugcccguguacAGCuGGCCGUCgUCg -3'
miRNA:   3'- gUCAGCGuuuuCU-----------UCGuCCGGCAG-AG- -5'
6918 3' -52.2 NC_001875.2 + 124693 0.68 0.9218
Target:  5'- gGGUCGCGcuggcacgugcGGuGAAGCAacaggcacgcgucGGCCGUUUCg -3'
miRNA:   3'- gUCAGCGU-----------UUuCUUCGU-------------CCGGCAGAG- -5'
6918 3' -52.2 NC_001875.2 + 96540 0.68 0.903846
Target:  5'- gCGGUCGCAAcuGGAGCuguuggaaaAGGCCGagUUu -3'
miRNA:   3'- -GUCAGCGUUuuCUUCG---------UCCGGCagAG- -5'
6918 3' -52.2 NC_001875.2 + 59193 0.7 0.859965
Target:  5'- gAGUaCGCAacAAAGAcacAGCAGGCCGcCg- -3'
miRNA:   3'- gUCA-GCGU--UUUCU---UCGUCCGGCaGag -5'
6918 3' -52.2 NC_001875.2 + 81424 0.72 0.739598
Target:  5'- aAGUgGCugu-GAAGCuGGCCGUCUg -3'
miRNA:   3'- gUCAgCGuuuuCUUCGuCCGGCAGAg -5'
6918 3' -52.2 NC_001875.2 + 68238 0.72 0.728298
Target:  5'- gCAGUUGCAAGAaaucguGGAGCuGGCCGUaaucacgCUCa -3'
miRNA:   3'- -GUCAGCGUUUU------CUUCGuCCGGCA-------GAG- -5'
6918 3' -52.2 NC_001875.2 + 33371 1.1 0.003934
Target:  5'- gCAGUCGCAAAAGAAGCAGGCCGUCUCg -3'
miRNA:   3'- -GUCAGCGUUUUCUUCGUCCGGCAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.