Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6919 | 3' | -55.9 | NC_001875.2 | + | 57308 | 0.66 | 0.874572 |
Target: 5'- -----cGGGCGCGCGucGUCGGcGACg -3' miRNA: 3'- ugaagaCCCGCGCGUguCAGUCaCUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 85667 | 0.66 | 0.867056 |
Target: 5'- -aUUgUGGGCGCGC-CGGccugCAGcGACu -3' miRNA: 3'- ugAAgACCCGCGCGuGUCa---GUCaCUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 42925 | 0.66 | 0.851368 |
Target: 5'- ----gUGGGCGU-CGCAGUCAaacGUGGCg -3' miRNA: 3'- ugaagACCCGCGcGUGUCAGU---CACUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 40638 | 0.67 | 0.834851 |
Target: 5'- aGCUcaaCUGGGCGCGCACGcGcCGGcUGuuGCg -3' miRNA: 3'- -UGAa--GACCCGCGCGUGU-CaGUC-AC--UG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 63684 | 0.67 | 0.808653 |
Target: 5'- uGCUUaaugagGGGCGCGCACgAGgugCGcGUGAUu -3' miRNA: 3'- -UGAAga----CCCGCGCGUG-UCa--GU-CACUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 97529 | 0.67 | 0.790337 |
Target: 5'- uCUUCgGGGUGgGCGCGuUUGGUGGCc -3' miRNA: 3'- uGAAGaCCCGCgCGUGUcAGUCACUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 131508 | 0.67 | 0.834851 |
Target: 5'- --gUCUGcGGCGCGCGguG-CAGcGGCu -3' miRNA: 3'- ugaAGAC-CCGCGCGUguCaGUCaCUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 106012 | 0.67 | 0.8263 |
Target: 5'- gACUucaUCUGGGCGuUGCAguGcUCGGcgGGCg -3' miRNA: 3'- -UGA---AGACCCGC-GCGUguC-AGUCa-CUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 65427 | 0.67 | 0.825435 |
Target: 5'- uACcUCguccGGCGUGCACcgcuggcGGUCGGUGGCc -3' miRNA: 3'- -UGaAGac--CCGCGCGUG-------UCAGUCACUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 7001 | 0.67 | 0.812238 |
Target: 5'- uGCUUCgacGuGGCGCGC-CAGUUgcuggacguaagcgaGGUGGCc -3' miRNA: 3'- -UGAAGa--C-CCGCGCGuGUCAG---------------UCACUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 884 | 0.67 | 0.798658 |
Target: 5'- --cUUUGGGCGCgagaacgGCGCAGUCGGccACg -3' miRNA: 3'- ugaAGACCCGCG-------CGUGUCAGUCacUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 122126 | 0.68 | 0.780952 |
Target: 5'- cGCUUC-GGGCGCGgCGCGGcCGGcgcgcacGACg -3' miRNA: 3'- -UGAAGaCCCGCGC-GUGUCaGUCa------CUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 89458 | 0.68 | 0.751997 |
Target: 5'- aACUgucUUUGGGCGC-CACGGcaaaAGUGGCg -3' miRNA: 3'- -UGA---AGACCCGCGcGUGUCag--UCACUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 119883 | 0.68 | 0.760799 |
Target: 5'- uGCUUCUgcaacgcgccgccGGucGCGCGCACAGUCGGc-GCg -3' miRNA: 3'- -UGAAGA-------------CC--CGCGCGUGUCAGUCacUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 71913 | 0.69 | 0.681037 |
Target: 5'- ---aCUGGGCGUGCGC-GUCGGcGAg -3' miRNA: 3'- ugaaGACCCGCGCGUGuCAGUCaCUg -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 98372 | 0.69 | 0.710874 |
Target: 5'- uUUUCUGGGCGCGCcccgaccACGacgaGGUGGCg -3' miRNA: 3'- uGAAGACCCGCGCG-------UGUcag-UCACUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 23005 | 0.69 | 0.732126 |
Target: 5'- cGCgUUUUGGGCGCGCACcguGuUCAGcguguugGACa -3' miRNA: 3'- -UG-AAGACCCGCGCGUGu--C-AGUCa------CUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 23138 | 0.69 | 0.72205 |
Target: 5'- --aUUUGGGUuuGCGCGCAGUCGaagGGCg -3' miRNA: 3'- ugaAGACCCG--CGCGUGUCAGUca-CUG- -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 102181 | 0.69 | 0.72205 |
Target: 5'- ---aCUGGGCGCGUACAG-C-GUGGu -3' miRNA: 3'- ugaaGACCCGCGCGUGUCaGuCACUg -5' |
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6919 | 3' | -55.9 | NC_001875.2 | + | 90670 | 0.72 | 0.535808 |
Target: 5'- cGCUggcgCUGGGgcUGCGCACAGUCAacgagGGCa -3' miRNA: 3'- -UGAa---GACCC--GCGCGUGUCAGUca---CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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