miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6919 5' -61.1 NC_001875.2 + 62836 0.66 0.608131
Target:  5'- cGcGCCACC--ACGUGCUUGCCCCc-- -3'
miRNA:   3'- aC-CGGUGGuuUGCGCGGGUGGGGcuu -5'
6919 5' -61.1 NC_001875.2 + 105681 0.66 0.608131
Target:  5'- cGGCCACCcacacacCGCGCCCGUCCa--- -3'
miRNA:   3'- aCCGGUGGuuu----GCGCGGGUGGGgcuu -5'
6919 5' -61.1 NC_001875.2 + 76518 0.66 0.607122
Target:  5'- cGGCgcgucauCACCGucGCGCGCCaCugCCgCGAAa -3'
miRNA:   3'- aCCG-------GUGGUu-UGCGCGG-GugGG-GCUU- -5'
6919 5' -61.1 NC_001875.2 + 89082 0.66 0.60208
Target:  5'- cGGCCGacCCGAGCGCGCCgcucaccaugcgcguCGCCgCGc- -3'
miRNA:   3'- aCCGGU--GGUUUGCGCGG---------------GUGGgGCuu -5'
6919 5' -61.1 NC_001875.2 + 41918 0.66 0.59805
Target:  5'- gUGGCC-CgCGGACGCGC-CGCCCUu-- -3'
miRNA:   3'- -ACCGGuG-GUUUGCGCGgGUGGGGcuu -5'
6919 5' -61.1 NC_001875.2 + 45959 0.66 0.587995
Target:  5'- gUGGCCAaCCAggUGCGgCggUACCCCa-- -3'
miRNA:   3'- -ACCGGU-GGUuuGCGCgG--GUGGGGcuu -5'
6919 5' -61.1 NC_001875.2 + 46017 0.66 0.587995
Target:  5'- cGGCCGCCc-ACGCaGCuggCCGCCgCGGAa -3'
miRNA:   3'- aCCGGUGGuuUGCG-CG---GGUGGgGCUU- -5'
6919 5' -61.1 NC_001875.2 + 34832 0.66 0.587995
Target:  5'- -uGCCGCCGuuuUGuCGCCCACaCCCGu- -3'
miRNA:   3'- acCGGUGGUuu-GC-GCGGGUG-GGGCuu -5'
6919 5' -61.1 NC_001875.2 + 3940 0.66 0.587995
Target:  5'- cGGCCcgcuuguUCAAauGCGCGCCCACaaaCCGu- -3'
miRNA:   3'- aCCGGu------GGUU--UGCGCGGGUGg--GGCuu -5'
6919 5' -61.1 NC_001875.2 + 39363 0.66 0.587995
Target:  5'- cGcCCGCCGucuCGUGCCUACCCUGc- -3'
miRNA:   3'- aCcGGUGGUuu-GCGCGGGUGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 69600 0.66 0.587995
Target:  5'- gUGGCgcuuuaCGCgGcGCGCGUCCACCCUGu- -3'
miRNA:   3'- -ACCG------GUGgUuUGCGCGGGUGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 57690 0.66 0.587995
Target:  5'- cUGGCgGCgGcGgGCGCCgCGCCCuCGAAc -3'
miRNA:   3'- -ACCGgUGgUuUgCGCGG-GUGGG-GCUU- -5'
6919 5' -61.1 NC_001875.2 + 55089 0.66 0.587995
Target:  5'- cGGCCAgCGcguccuUGUGCUCGuCCCCGAAu -3'
miRNA:   3'- aCCGGUgGUuu----GCGCGGGU-GGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 34697 0.66 0.587995
Target:  5'- gGGCCGCCccAACGgGUUCGCCauagCCGAGu -3'
miRNA:   3'- aCCGGUGGu-UUGCgCGGGUGG----GGCUU- -5'
6919 5' -61.1 NC_001875.2 + 126634 0.67 0.57797
Target:  5'- aGGCCAUC-AGCGUuaUCGCCCCa-- -3'
miRNA:   3'- aCCGGUGGuUUGCGcgGGUGGGGcuu -5'
6919 5' -61.1 NC_001875.2 + 62203 0.67 0.57797
Target:  5'- gGGCUgagGCCGAcgGCGUCCACCUCGc- -3'
miRNA:   3'- aCCGG---UGGUUugCGCGGGUGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 99033 0.67 0.57797
Target:  5'- cGGCgccguuCGCCGAGCuugccggcgcgGCGCCCGCCCaCGc- -3'
miRNA:   3'- aCCG------GUGGUUUG-----------CGCGGGUGGG-GCuu -5'
6919 5' -61.1 NC_001875.2 + 96894 0.67 0.57797
Target:  5'- cUGGCCGCCcgugaacgaAAACGUGCUUgaaGCCCUGu- -3'
miRNA:   3'- -ACCGGUGG---------UUUGCGCGGG---UGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 97964 0.67 0.567984
Target:  5'- cGGCCACCgAAACGCcguucuGCCgGCCgCGc- -3'
miRNA:   3'- aCCGGUGG-UUUGCG------CGGgUGGgGCuu -5'
6919 5' -61.1 NC_001875.2 + 77264 0.67 0.567984
Target:  5'- cGcGCCGCCGGGCgaaGCGgCCGCCgCGGc -3'
miRNA:   3'- aC-CGGUGGUUUG---CGCgGGUGGgGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.