Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
692 | 3' | -59.4 | AC_000018.1 | + | 22979 | 1.09 | 0.000222 |
Target: 5'- uCCAUGAGCCCACAGAGCGCACCCGGUg -3' miRNA: 3'- -GGUACUCGGGUGUCUCGCGUGGGCCA- -5' |
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692 | 3' | -59.4 | AC_000018.1 | + | 5626 | 0.7 | 0.207315 |
Target: 5'- uUAUGGGCCUguccucgaGCGGAGUGC-CUCGGUc -3' miRNA: 3'- gGUACUCGGG--------UGUCUCGCGuGGGCCA- -5' |
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692 | 3' | -59.4 | AC_000018.1 | + | 10234 | 0.69 | 0.255888 |
Target: 5'- cCCcgGAGCCCcggcuACAGAGCGaugGCCCc-- -3' miRNA: 3'- -GGuaCUCGGG-----UGUCUCGCg--UGGGcca -5' |
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692 | 3' | -59.4 | AC_000018.1 | + | 23069 | 0.68 | 0.283494 |
Target: 5'- --cUGAgaucGCCCACaauaguugGGAGUGCACCgGGUg -3' miRNA: 3'- gguACU----CGGGUG--------UCUCGCGUGGgCCA- -5' |
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692 | 3' | -59.4 | AC_000018.1 | + | 27773 | 0.68 | 0.283494 |
Target: 5'- uCCGUGGGCcggacCCugAGGGUGCuCCuCGGg -3' miRNA: 3'- -GGUACUCG-----GGugUCUCGCGuGG-GCCa -5' |
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692 | 3' | -59.4 | AC_000018.1 | + | 6393 | 0.68 | 0.301161 |
Target: 5'- gCAUGAGCUCAuCAGGGgggucCGCAucuaugguaaauauuCCCGGUa -3' miRNA: 3'- gGUACUCGGGU-GUCUC-----GCGU---------------GGGCCA- -5' |
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692 | 3' | -59.4 | AC_000018.1 | + | 5304 | 0.67 | 0.345644 |
Target: 5'- aCCAUGAGUUCGuaguuGAGCGC-CUCGGc -3' miRNA: 3'- -GGUACUCGGGUgu---CUCGCGuGGGCCa -5' |
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692 | 3' | -59.4 | AC_000018.1 | + | 22568 | 0.66 | 0.380196 |
Target: 5'- gCCu---GCCCAUcacgGGAGCGCAgCCUGGc -3' miRNA: 3'- -GGuacuCGGGUG----UCUCGCGU-GGGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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