miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6923 5' -62.3 NC_001875.2 + 43547 0.66 0.577347
Target:  5'- -cGGUGCGGaCAau--CACCGCGUCGc -3'
miRNA:   3'- gaCCGCGCC-GUgaccGUGGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 94258 0.66 0.576364
Target:  5'- -cGGcCGCGGCGCUcGCGCCgGCGcauccacUCGa -3'
miRNA:   3'- gaCC-GCGCCGUGAcCGUGG-CGC-------AGCa -5'
6923 5' -62.3 NC_001875.2 + 114013 0.66 0.567539
Target:  5'- -cGGCGCccucGCGCaUGGCGgCCGCG-CGg -3'
miRNA:   3'- gaCCGCGc---CGUG-ACCGU-GGCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 54021 0.66 0.567539
Target:  5'- -cGGCGCGcgcGUACcGGCACU-CGUCGUu -3'
miRNA:   3'- gaCCGCGC---CGUGaCCGUGGcGCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 17484 0.66 0.567539
Target:  5'- aUGGC-CaGCAagUUGGCggacGCCGCGUCGUu -3'
miRNA:   3'- gACCGcGcCGU--GACCG----UGGCGCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 94301 0.66 0.567539
Target:  5'- uCUGGUGCuccagcagguugGGCGCguccaGGCAgggCGCGUCGUc -3'
miRNA:   3'- -GACCGCG------------CCGUGa----CCGUg--GCGCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 44455 0.66 0.557774
Target:  5'- -aGGCGCcgucGGCGCaGuGCGCCaaGUCGUg -3'
miRNA:   3'- gaCCGCG----CCGUGaC-CGUGGcgCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 73790 0.66 0.557774
Target:  5'- gUGGCgGCGGCgGCUGgaacggcagcGCGCCGCccacguuguaGUCGUa -3'
miRNA:   3'- gACCG-CGCCG-UGAC----------CGUGGCG----------CAGCA- -5'
6923 5' -62.3 NC_001875.2 + 53850 0.66 0.557774
Target:  5'- aUGGUcucGCGcaCGCUGGCACCGUcggccuguugGUCGUg -3'
miRNA:   3'- gACCG---CGCc-GUGACCGUGGCG----------CAGCA- -5'
6923 5' -62.3 NC_001875.2 + 101170 0.67 0.548058
Target:  5'- gUGcGCGUGGCGCUGGuCAauuaCGUGcCGg -3'
miRNA:   3'- gAC-CGCGCCGUGACC-GUg---GCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 63719 0.67 0.548058
Target:  5'- -cGGuCGCGGCgACggcgGGCGCUucgccgGCGUCGc -3'
miRNA:   3'- gaCC-GCGCCG-UGa---CCGUGG------CGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 3539 0.67 0.548058
Target:  5'- uUGGCGCacguCACcGGCGCCGUGgcgCGUc -3'
miRNA:   3'- gACCGCGcc--GUGaCCGUGGCGCa--GCA- -5'
6923 5' -62.3 NC_001875.2 + 81470 0.67 0.548058
Target:  5'- gCUGGUccGCGGuCAgUGGCGCgCGCGgccCGa -3'
miRNA:   3'- -GACCG--CGCC-GUgACCGUG-GCGCa--GCa -5'
6923 5' -62.3 NC_001875.2 + 11077 0.67 0.544186
Target:  5'- uUGGCGUGGCGCgcgcccuggacacGGcCGCCGUcUCGg -3'
miRNA:   3'- gACCGCGCCGUGa------------CC-GUGGCGcAGCa -5'
6923 5' -62.3 NC_001875.2 + 19864 0.67 0.538395
Target:  5'- -cGGCcgcgucGCGGCGCgGGCGCCGUuugCGa -3'
miRNA:   3'- gaCCG------CGCCGUGaCCGUGGCGca-GCa -5'
6923 5' -62.3 NC_001875.2 + 65776 0.67 0.538395
Target:  5'- gCUGG-GCGaGCAC-GcGCGCgGCGUCGg -3'
miRNA:   3'- -GACCgCGC-CGUGaC-CGUGgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 75316 0.67 0.538395
Target:  5'- aUGGCGuCGGCGaUGGCGuCgGUGUUGg -3'
miRNA:   3'- gACCGC-GCCGUgACCGU-GgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 97880 0.67 0.538395
Target:  5'- gCUGcGCGCcGCACgGGCACguugcggGCGUCGg -3'
miRNA:   3'- -GAC-CGCGcCGUGaCCGUGg------CGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 83453 0.67 0.538395
Target:  5'- -cGaGC-CGGCAcCUGuCGCCGCGUCGg -3'
miRNA:   3'- gaC-CGcGCCGU-GACcGUGGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 62982 0.67 0.528792
Target:  5'- uUGuCGgGGCACUcGcGCACCGCGUgCGa -3'
miRNA:   3'- gACcGCgCCGUGA-C-CGUGGCGCA-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.