miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6925 3' -52.9 NC_001875.2 + 17662 0.66 0.969866
Target:  5'- cGCGCUggcggugaagcuggCGUUUaGCCGACGc-GGCuGCGa -3'
miRNA:   3'- -UGCGAa-------------GCAAA-CGGCUGUuaCCG-CGC- -5'
6925 3' -52.9 NC_001875.2 + 99034 0.66 0.968637
Target:  5'- gGCGCcgUUCGccgagcUUGCCGGCGc-GGCGCc -3'
miRNA:   3'- -UGCG--AAGCa-----AACGGCUGUuaCCGCGc -5'
6925 3' -52.9 NC_001875.2 + 73852 0.66 0.968637
Target:  5'- aGCGCUgg---UGCCGuuGGUgcGGCGCGa -3'
miRNA:   3'- -UGCGAagcaaACGGCugUUA--CCGCGC- -5'
6925 3' -52.9 NC_001875.2 + 44883 0.66 0.968637
Target:  5'- uGCGCUUUGc--GCCgcuugGACGcUGGCGCu -3'
miRNA:   3'- -UGCGAAGCaaaCGG-----CUGUuACCGCGc -5'
6925 3' -52.9 NC_001875.2 + 111316 0.66 0.968637
Target:  5'- aACGCUgUCGUaaaugUUGCUgGugGcgGGCGCc -3'
miRNA:   3'- -UGCGA-AGCA-----AACGG-CugUuaCCGCGc -5'
6925 3' -52.9 NC_001875.2 + 2946 0.66 0.968637
Target:  5'- cGCGCUggcgCGcUUGCuCGGCAGcGGUGuCGa -3'
miRNA:   3'- -UGCGAa---GCaAACG-GCUGUUaCCGC-GC- -5'
6925 3' -52.9 NC_001875.2 + 61709 0.66 0.966728
Target:  5'- aGCGCauuuguaggcccgauUUUGUUgucgGCCGGCugcGGCGCa -3'
miRNA:   3'- -UGCG---------------AAGCAAa---CGGCUGuuaCCGCGc -5'
6925 3' -52.9 NC_001875.2 + 5187 0.66 0.96541
Target:  5'- -aGUUuuaUCGgccUGCUGAUAGUGGgGCGa -3'
miRNA:   3'- ugCGA---AGCaa-ACGGCUGUUACCgCGC- -5'
6925 3' -52.9 NC_001875.2 + 19972 0.66 0.96541
Target:  5'- gGCGCcUCGccgUUGCUGACGu--GCGUGg -3'
miRNA:   3'- -UGCGaAGCa--AACGGCUGUuacCGCGC- -5'
6925 3' -52.9 NC_001875.2 + 43680 0.66 0.96541
Target:  5'- cAUGCacCGUUUGCCGucgugcgcccacACAAuuuUGGCGCc -3'
miRNA:   3'- -UGCGaaGCAAACGGC------------UGUU---ACCGCGc -5'
6925 3' -52.9 NC_001875.2 + 6942 0.66 0.96541
Target:  5'- aACGCgUCGUgcgUGCgccgCGACAucgccacGGCGCGc -3'
miRNA:   3'- -UGCGaAGCAa--ACG----GCUGUua-----CCGCGC- -5'
6925 3' -52.9 NC_001875.2 + 85288 0.66 0.96541
Target:  5'- cACGgUUUGcgcgGgCGGCGcgGGCGCGg -3'
miRNA:   3'- -UGCgAAGCaaa-CgGCUGUuaCCGCGC- -5'
6925 3' -52.9 NC_001875.2 + 75528 0.66 0.96541
Target:  5'- gGCGUUggugauggCGUUggugauagcGUCGGCGAUGGCGuCGg -3'
miRNA:   3'- -UGCGAa-------GCAAa--------CGGCUGUUACCGC-GC- -5'
6925 3' -52.9 NC_001875.2 + 5925 0.66 0.96541
Target:  5'- gGCGUUggGUagcGCCGcGCAGgugGGCGCGg -3'
miRNA:   3'- -UGCGAagCAaa-CGGC-UGUUa--CCGCGC- -5'
6925 3' -52.9 NC_001875.2 + 75366 0.66 0.96541
Target:  5'- gGCGUUggugauggCGUUggugauggcGUCGGCGAUGGCGuCGg -3'
miRNA:   3'- -UGCGAa-------GCAAa--------CGGCUGUUACCGC-GC- -5'
6925 3' -52.9 NC_001875.2 + 15908 0.66 0.96541
Target:  5'- cGCGCUaC-UUUGCCGGCAccGGCa-- -3'
miRNA:   3'- -UGCGAaGcAAACGGCUGUuaCCGcgc -5'
6925 3' -52.9 NC_001875.2 + 39656 0.66 0.96541
Target:  5'- cGCGCga-GUUuggGCCGGC---GGCGCGc -3'
miRNA:   3'- -UGCGaagCAAa--CGGCUGuuaCCGCGC- -5'
6925 3' -52.9 NC_001875.2 + 70455 0.66 0.965075
Target:  5'- cACGUUUCGUUUGuuGAacgaaaacaaaacCGA-GGCGUa -3'
miRNA:   3'- -UGCGAAGCAAACggCU-------------GUUaCCGCGc -5'
6925 3' -52.9 NC_001875.2 + 120647 0.66 0.961956
Target:  5'- gGCGCggCGUcgUGCuCcACAAcGGCGCGc -3'
miRNA:   3'- -UGCGaaGCAa-ACG-GcUGUUaCCGCGC- -5'
6925 3' -52.9 NC_001875.2 + 92947 0.66 0.961956
Target:  5'- aGCGCUugUCGUaagcuugGCCuGCuAUGGCGCc -3'
miRNA:   3'- -UGCGA--AGCAaa-----CGGcUGuUACCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.