miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6925 5' -62.4 NC_001875.2 + 12966 0.66 0.632822
Target:  5'- uCGCG-GCGGGcgUGGGCUccgcgccguGGUGGCu- -3'
miRNA:   3'- -GCGCgCGCUCaaACCCGG---------CCGCCGcg -5'
6925 5' -62.4 NC_001875.2 + 81992 0.66 0.632822
Target:  5'- gGCGCGCc------GGCCGGC-GCGCa -3'
miRNA:   3'- gCGCGCGcucaaacCCGGCCGcCGCG- -5'
6925 5' -62.4 NC_001875.2 + 73840 0.66 0.632822
Target:  5'- uGCGUuCGAGcaagcgcUGGuGCCGuugguGCGGCGCg -3'
miRNA:   3'- gCGCGcGCUCaa-----ACC-CGGC-----CGCCGCG- -5'
6925 5' -62.4 NC_001875.2 + 79700 0.66 0.622985
Target:  5'- gGuCGaugaGCGAG-UUGGGCCG-CGGCa- -3'
miRNA:   3'- gC-GCg---CGCUCaAACCCGGCcGCCGcg -5'
6925 5' -62.4 NC_001875.2 + 84340 0.66 0.622985
Target:  5'- aGCG-GCGAGUggcGGagcggcugcGCCGGUaGGUGCg -3'
miRNA:   3'- gCGCgCGCUCAaa-CC---------CGGCCG-CCGCG- -5'
6925 5' -62.4 NC_001875.2 + 44370 0.66 0.622985
Target:  5'- uCGCGCuuuaGCcGGUacacaauuUUGGGCacguCGGCGcGCGCg -3'
miRNA:   3'- -GCGCG----CGcUCA--------AACCCG----GCCGC-CGCG- -5'
6925 5' -62.4 NC_001875.2 + 39027 0.66 0.622985
Target:  5'- uGCGCGCaccuc--GGCaucggCGGCGGCGCu -3'
miRNA:   3'- gCGCGCGcucaaacCCG-----GCCGCCGCG- -5'
6925 5' -62.4 NC_001875.2 + 87246 0.66 0.622001
Target:  5'- aGCGCGCGc---UGGGCCaaaaauuGGacgccauuaCGGCGCu -3'
miRNA:   3'- gCGCGCGCucaaACCCGG-------CC---------GCCGCG- -5'
6925 5' -62.4 NC_001875.2 + 74122 0.66 0.617085
Target:  5'- gGCGCGUguucgccuagagcugGAGUUcgaGGGC--GCGGCGCc -3'
miRNA:   3'- gCGCGCG---------------CUCAAa--CCCGgcCGCCGCG- -5'
6925 5' -62.4 NC_001875.2 + 98947 0.66 0.613154
Target:  5'- aCGCGCGCGuGUUca-GCCGuuuGCaGCGCu -3'
miRNA:   3'- -GCGCGCGCuCAAaccCGGC---CGcCGCG- -5'
6925 5' -62.4 NC_001875.2 + 22584 0.66 0.613154
Target:  5'- gGCGCgGCGcGUU--GGCCGGcCGGCuGUa -3'
miRNA:   3'- gCGCG-CGCuCAAacCCGGCC-GCCG-CG- -5'
6925 5' -62.4 NC_001875.2 + 70183 0.66 0.613154
Target:  5'- gGCGCaGCGAGcc-GGGCggcgaCGGCgaccacugGGCGCc -3'
miRNA:   3'- gCGCG-CGCUCaaaCCCG-----GCCG--------CCGCG- -5'
6925 5' -62.4 NC_001875.2 + 54569 0.66 0.613154
Target:  5'- uGCGcCGCGGc----GGCCgcuucgcccGGCGGCGCg -3'
miRNA:   3'- gCGC-GCGCUcaaacCCGG---------CCGCCGCG- -5'
6925 5' -62.4 NC_001875.2 + 99581 0.66 0.610207
Target:  5'- aCGCGCGCGuauaaaa---GGCGGCGCg -3'
miRNA:   3'- -GCGCGCGCucaaacccggCCGCCGCG- -5'
6925 5' -62.4 NC_001875.2 + 45227 0.66 0.603336
Target:  5'- uCGCGCGCGAaca------GGCGGCGCg -3'
miRNA:   3'- -GCGCGCGCUcaaacccggCCGCCGCG- -5'
6925 5' -62.4 NC_001875.2 + 31866 0.66 0.603336
Target:  5'- uCGCGCGUGGac-UGGcGCCGGUugcaaguuGGCGa -3'
miRNA:   3'- -GCGCGCGCUcaaACC-CGGCCG--------CCGCg -5'
6925 5' -62.4 NC_001875.2 + 95310 0.66 0.600395
Target:  5'- uGCGCGCcagcgccGUUUGGcgaaacaucaauuuGucguaaCCGGCGGCGCa -3'
miRNA:   3'- gCGCGCGcu-----CAAACC--------------C------GGCCGCCGCG- -5'
6925 5' -62.4 NC_001875.2 + 11056 0.66 0.593539
Target:  5'- aCGCGCGCaaacugcagcAGUUUGGcG-UGGCGcGCGCc -3'
miRNA:   3'- -GCGCGCGc---------UCAAACC-CgGCCGC-CGCG- -5'
6925 5' -62.4 NC_001875.2 + 100038 0.66 0.593539
Target:  5'- uGCGCGCuGGUUuugcuguuugUGGaGCUGaCGGUGCu -3'
miRNA:   3'- gCGCGCGcUCAA----------ACC-CGGCcGCCGCG- -5'
6925 5' -62.4 NC_001875.2 + 98369 0.66 0.593539
Target:  5'- aGCGCGCGGcgcgccacuuucGaccacuGGCCGGCcGCGCu -3'
miRNA:   3'- gCGCGCGCU------------Caaac--CCGGCCGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.