miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6927 3' -65.1 NC_001875.2 + 1739 0.66 0.463181
Target:  5'- cGCgCCGCCGCCGcCGCCAuuuccGUcGGCGg- -3'
miRNA:   3'- cUG-GGCGGCGGC-GUGGU-----CGuCCGCgg -5'
6927 3' -65.1 NC_001875.2 + 17273 0.66 0.463181
Target:  5'- cGACgCGCacaaucCGCCGCACUggAGCGucguGaGCGCCg -3'
miRNA:   3'- -CUGgGCG------GCGGCGUGG--UCGU----C-CGCGG- -5'
6927 3' -65.1 NC_001875.2 + 77377 0.66 0.463181
Target:  5'- -uCCUGCCGCacaCGCugU-GC-GGCGCCg -3'
miRNA:   3'- cuGGGCGGCG---GCGugGuCGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 89153 0.66 0.463181
Target:  5'- --aCCGCgCGCCGCGCgGuuucgugcacGCuGGCGCa -3'
miRNA:   3'- cugGGCG-GCGGCGUGgU----------CGuCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 29662 0.66 0.463181
Target:  5'- aGACCaCGCUGUaCGCGcCCAGUuGGaaCGCCa -3'
miRNA:   3'- -CUGG-GCGGCG-GCGU-GGUCGuCC--GCGG- -5'
6927 3' -65.1 NC_001875.2 + 74266 0.66 0.463181
Target:  5'- gGACagCGCgaCGCCGCGCCGGUuuacGCGCg -3'
miRNA:   3'- -CUGg-GCG--GCGGCGUGGUCGuc--CGCGg -5'
6927 3' -65.1 NC_001875.2 + 124868 0.66 0.462295
Target:  5'- uGCCCGCUGUucaagcagCGCGCCguGGCGaugucgcGGCGCa -3'
miRNA:   3'- cUGGGCGGCG--------GCGUGG--UCGU-------CCGCGg -5'
6927 3' -65.1 NC_001875.2 + 73866 0.66 0.457878
Target:  5'- cGGCCCGUcaggucggaaaaaaaCuGCacgauuaGCGCCGGCAuGGCGUCg -3'
miRNA:   3'- -CUGGGCG---------------G-CGg------CGUGGUCGU-CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 29514 0.66 0.457878
Target:  5'- aGACgCGCgGCUuuguuuuucaugucuGCGCCuucuuGCGGcGCGCCa -3'
miRNA:   3'- -CUGgGCGgCGG---------------CGUGGu----CGUC-CGCGG- -5'
6927 3' -65.1 NC_001875.2 + 110492 0.66 0.454361
Target:  5'- cGGCCCaucuguucaaGCaCGUCGC-CCAGguGGCcgcggGCCa -3'
miRNA:   3'- -CUGGG----------CG-GCGGCGuGGUCguCCG-----CGG- -5'
6927 3' -65.1 NC_001875.2 + 50906 0.66 0.454361
Target:  5'- gGGCCCGUCGuaGUcuauGCCgaGGCugugguuuuucAGGCGCCg -3'
miRNA:   3'- -CUGGGCGGCggCG----UGG--UCG-----------UCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 107505 0.66 0.454361
Target:  5'- aGCUgaaCGCCGCgGCACgCuuGUuGGCGCCg -3'
miRNA:   3'- cUGG---GCGGCGgCGUG-Gu-CGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 98859 0.66 0.454361
Target:  5'- -uCCCGCgaguugGUgGCGCUAaugugcGCGGGCGCCg -3'
miRNA:   3'- cuGGGCGg-----CGgCGUGGU------CGUCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 65798 0.66 0.454361
Target:  5'- -gUCgGCgCGCgGUGCCuGCGcGGCGCCa -3'
miRNA:   3'- cuGGgCG-GCGgCGUGGuCGU-CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 21334 0.66 0.454361
Target:  5'- gGGCCCGCCuuGuuG-ACgAGCAG-CGCCg -3'
miRNA:   3'- -CUGGGCGG--CggCgUGgUCGUCcGCGG- -5'
6927 3' -65.1 NC_001875.2 + 94416 0.66 0.454361
Target:  5'- --gCCGCCGaCUGCGCCA-CGGccucuuccacGCGCCg -3'
miRNA:   3'- cugGGCGGC-GGCGUGGUcGUC----------CGCGG- -5'
6927 3' -65.1 NC_001875.2 + 77977 0.66 0.454361
Target:  5'- cGACCaacagGCCGaCgGUGCCAGCGuGCGCg -3'
miRNA:   3'- -CUGGg----CGGC-GgCGUGGUCGUcCGCGg -5'
6927 3' -65.1 NC_001875.2 + 124774 0.66 0.453484
Target:  5'- cGCCCGUguuguugagCGCgcggauuaugucuUGCACCAGCGuggcGGCGCUa -3'
miRNA:   3'- cUGGGCG---------GCG-------------GCGUGGUCGU----CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 111317 0.66 0.453484
Target:  5'- ---aCGCUGUCGUaaauguuGCUgguGGCGGGCGCCa -3'
miRNA:   3'- cuggGCGGCGGCG-------UGG---UCGUCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 63907 0.66 0.453484
Target:  5'- cGCCguggCGCCGCCGCAUCAugaacccgaacccGUuccugccgaggaAGGCGCUg -3'
miRNA:   3'- cUGG----GCGGCGGCGUGGU-------------CG------------UCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.