miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6927 5' -54.8 NC_001875.2 + 31684 0.66 0.946671
Target:  5'- gCGUG-CCGGCgUGGaccGCCGCUUgCGCGc -3'
miRNA:   3'- gGCACcGGCUG-ACCa--UGGUGAA-GUGC- -5'
6927 5' -54.8 NC_001875.2 + 109113 0.66 0.94219
Target:  5'- gCGUGGCCGGCgcacaaGUagGCCACagUgGCGa -3'
miRNA:   3'- gGCACCGGCUGac----CA--UGGUGa-AgUGC- -5'
6927 5' -54.8 NC_001875.2 + 59590 0.66 0.937471
Target:  5'- gCGUGGCCGAC--GUGCgCGag-CACGg -3'
miRNA:   3'- gGCACCGGCUGacCAUG-GUgaaGUGC- -5'
6927 5' -54.8 NC_001875.2 + 37174 0.66 0.937471
Target:  5'- cCCGUG-CCGcgcGCUGGc-CCAUUUCAUGu -3'
miRNA:   3'- -GGCACcGGC---UGACCauGGUGAAGUGC- -5'
6927 5' -54.8 NC_001875.2 + 100803 0.66 0.932513
Target:  5'- aCGUacGGCCGcGCcgGGUcgGCCGCUUCAa- -3'
miRNA:   3'- gGCA--CCGGC-UGa-CCA--UGGUGAAGUgc -5'
6927 5' -54.8 NC_001875.2 + 33411 0.66 0.932513
Target:  5'- cUCGUGGCUGAgCUGGcgcucguCCGCUUgaaaCACa -3'
miRNA:   3'- -GGCACCGGCU-GACCau-----GGUGAA----GUGc -5'
6927 5' -54.8 NC_001875.2 + 98993 0.66 0.921319
Target:  5'- --uUGGCCGGacggcaccagguuUUGGUGCCACgcUCGCa -3'
miRNA:   3'- ggcACCGGCU-------------GACCAUGGUGa-AGUGc -5'
6927 5' -54.8 NC_001875.2 + 61895 0.67 0.916197
Target:  5'- gCCGUGGcCCGACacGcGCCGugUCACGg -3'
miRNA:   3'- -GGCACC-GGCUGacCaUGGUgaAGUGC- -5'
6927 5' -54.8 NC_001875.2 + 111765 0.67 0.916197
Target:  5'- aCGUGcGCCGACgacUGGUGUCGCUggUgACGg -3'
miRNA:   3'- gGCAC-CGGCUG---ACCAUGGUGA--AgUGC- -5'
6927 5' -54.8 NC_001875.2 + 129531 0.67 0.910278
Target:  5'- gCCGagcUGGCCGAgCUGcGcgcgGCCACggCGCGc -3'
miRNA:   3'- -GGC---ACCGGCU-GAC-Ca---UGGUGaaGUGC- -5'
6927 5' -54.8 NC_001875.2 + 109014 0.67 0.904122
Target:  5'- gUCGUGccGCCGAC-GGUGCCGuCggaccgCACGg -3'
miRNA:   3'- -GGCAC--CGGCUGaCCAUGGU-Gaa----GUGC- -5'
6927 5' -54.8 NC_001875.2 + 123733 0.68 0.884252
Target:  5'- gCGUGGCCaACUugcuguuuaucGGUACgGCcgUCGCGa -3'
miRNA:   3'- gGCACCGGcUGA-----------CCAUGgUGa-AGUGC- -5'
6927 5' -54.8 NC_001875.2 + 62396 0.68 0.868391
Target:  5'- gCGUGGCCGGCgcgcaaacgccgGcGUcaAgCACUUCGCGu -3'
miRNA:   3'- gGCACCGGCUGa-----------C-CA--UgGUGAAGUGC- -5'
6927 5' -54.8 NC_001875.2 + 128769 0.68 0.862363
Target:  5'- gCCGUGGgCGACcccGGcgcGCCGCUgCGCGc -3'
miRNA:   3'- -GGCACCgGCUGa--CCa--UGGUGAaGUGC- -5'
6927 5' -54.8 NC_001875.2 + 63141 0.68 0.846717
Target:  5'- gCGcGGCCGGCgcacgGGU-CCACgggCACGc -3'
miRNA:   3'- gGCaCCGGCUGa----CCAuGGUGaa-GUGC- -5'
6927 5' -54.8 NC_001875.2 + 77985 0.68 0.846717
Target:  5'- ---aGGCCGAC-GGUGCCAgCgugCGCGa -3'
miRNA:   3'- ggcaCCGGCUGaCCAUGGU-Gaa-GUGC- -5'
6927 5' -54.8 NC_001875.2 + 67172 0.68 0.846717
Target:  5'- gCGUGGUgGACaccgcggucgGGUaGCCGCUUUGCGa -3'
miRNA:   3'- gGCACCGgCUGa---------CCA-UGGUGAAGUGC- -5'
6927 5' -54.8 NC_001875.2 + 10167 0.69 0.813131
Target:  5'- -gGUGGCCGACgag-ACCACcgUCACc -3'
miRNA:   3'- ggCACCGGCUGaccaUGGUGa-AGUGc -5'
6927 5' -54.8 NC_001875.2 + 110262 0.69 0.804301
Target:  5'- aCGgcugGGCCGGCUGG--CCGCggagCGCGc -3'
miRNA:   3'- gGCa---CCGGCUGACCauGGUGaa--GUGC- -5'
6927 5' -54.8 NC_001875.2 + 89273 0.7 0.7675
Target:  5'- gCGUGcGCCGAcCUGGcGCgGCUgggCGCGa -3'
miRNA:   3'- gGCAC-CGGCU-GACCaUGgUGAa--GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.