miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6928 3' -59.6 NC_001875.2 + 72557 0.66 0.694208
Target:  5'- gGgCGCUGcGGGCgCG-GGCGCGGgCGCu -3'
miRNA:   3'- -CgGCGACaCCUG-GUaCUGCGCC-GCGu -5'
6928 3' -59.6 NC_001875.2 + 14220 0.66 0.694208
Target:  5'- -aCGCUG-GGGCCGUG-CGCaaaGCGCc -3'
miRNA:   3'- cgGCGACaCCUGGUACuGCGc--CGCGu -5'
6928 3' -59.6 NC_001875.2 + 12677 0.66 0.694208
Target:  5'- cGCCGC-GUuGGCCggGUGugGCGGCa-- -3'
miRNA:   3'- -CGGCGaCAcCUGG--UACugCGCCGcgu -5'
6928 3' -59.6 NC_001875.2 + 33569 0.66 0.694208
Target:  5'- cGCCGCgg-GGcACCAUgcccgagucggcGACGUGGCGg- -3'
miRNA:   3'- -CGGCGacaCC-UGGUA------------CUGCGCCGCgu -5'
6928 3' -59.6 NC_001875.2 + 120680 0.67 0.684247
Target:  5'- cGCUGCUGUGcGCCAUcGAC-CGGC-CGu -3'
miRNA:   3'- -CGGCGACACcUGGUA-CUGcGCCGcGU- -5'
6928 3' -59.6 NC_001875.2 + 41340 0.67 0.684247
Target:  5'- cGCCGUgcaaGUGGGCCGcgcgcaguuUGaACGCGcGCuGCAg -3'
miRNA:   3'- -CGGCGa---CACCUGGU---------AC-UGCGC-CG-CGU- -5'
6928 3' -59.6 NC_001875.2 + 108742 0.67 0.674244
Target:  5'- gGCCuuUGgcgGGGCagcUGcACGCGGCGCGg -3'
miRNA:   3'- -CGGcgACa--CCUGgu-AC-UGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 89159 0.67 0.674244
Target:  5'- cGCCGCgc-GGuuUCGUGcACGCuGGCGCAa -3'
miRNA:   3'- -CGGCGacaCCu-GGUAC-UGCG-CCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 18261 0.67 0.674244
Target:  5'- cGCCGUgcUGGcCCaAUGGCGCGccguGCGCGa -3'
miRNA:   3'- -CGGCGacACCuGG-UACUGCGC----CGCGU- -5'
6928 3' -59.6 NC_001875.2 + 84454 0.67 0.674244
Target:  5'- gGCgGCgGUaGACCAUGAUGCGcGUGUu -3'
miRNA:   3'- -CGgCGaCAcCUGGUACUGCGC-CGCGu -5'
6928 3' -59.6 NC_001875.2 + 89394 0.67 0.664207
Target:  5'- cGCCGCaGcGG-CCGcUGACGCaGGCGUu -3'
miRNA:   3'- -CGGCGaCaCCuGGU-ACUGCG-CCGCGu -5'
6928 3' -59.6 NC_001875.2 + 33231 0.67 0.664207
Target:  5'- gGCuCGCcG-GGcGCCGUuucGGCGCGGCGCu -3'
miRNA:   3'- -CG-GCGaCaCC-UGGUA---CUGCGCCGCGu -5'
6928 3' -59.6 NC_001875.2 + 110813 0.67 0.654145
Target:  5'- cGCCGCgcagGUGGAC----GCGCuGGUGCGc -3'
miRNA:   3'- -CGGCGa---CACCUGguacUGCG-CCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 71124 0.67 0.653138
Target:  5'- uGuuGCUGUGGcugggcgGCCucaGCGCGGcCGCGu -3'
miRNA:   3'- -CggCGACACC-------UGGuacUGCGCC-GCGU- -5'
6928 3' -59.6 NC_001875.2 + 58076 0.67 0.644066
Target:  5'- -gCGCUGUcGGCgGucUGGCGCGuGCGCAc -3'
miRNA:   3'- cgGCGACAcCUGgU--ACUGCGC-CGCGU- -5'
6928 3' -59.6 NC_001875.2 + 119163 0.67 0.644066
Target:  5'- uGCCGCcacacccGGCCA--ACGCGGCGCGc -3'
miRNA:   3'- -CGGCGacac---CUGGUacUGCGCCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 95225 0.67 0.633978
Target:  5'- uGCCGCgaucgGUGGugCAagGGCGaC-GCGCAg -3'
miRNA:   3'- -CGGCGa----CACCugGUa-CUGC-GcCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 545 0.67 0.633978
Target:  5'- cGUCGUUGUGGauguaGCCgGUGGCGuuGUGCAa -3'
miRNA:   3'- -CGGCGACACC-----UGG-UACUGCgcCGCGU- -5'
6928 3' -59.6 NC_001875.2 + 17758 0.68 0.623889
Target:  5'- uGCCGCuUGUGGACacg---GCGGCGUu -3'
miRNA:   3'- -CGGCG-ACACCUGguacugCGCCGCGu -5'
6928 3' -59.6 NC_001875.2 + 43523 0.68 0.623889
Target:  5'- gGUCGUcgGUGGA-CGUGAcgacCGCGGUGCGg -3'
miRNA:   3'- -CGGCGa-CACCUgGUACU----GCGCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.