miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6928 5' -53.3 NC_001875.2 + 13928 0.66 0.961172
Target:  5'- gGCCGuCGCGUuCGUUAucUCGGCcAUAACa -3'
miRNA:   3'- -CGGC-GCGCGcGCAGU--AGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 120759 0.66 0.96081
Target:  5'- gGCCGUguccaggGCGCGCGcCAcgccaAACUGCuGCa -3'
miRNA:   3'- -CGGCG-------CGCGCGCaGUag---UUGAUGuUG- -5'
6928 5' -53.3 NC_001875.2 + 30950 0.66 0.960079
Target:  5'- cGCUGCgGCGCccggaccggcuuacGCGUUAUCAcgaaUACGACc -3'
miRNA:   3'- -CGGCG-CGCG--------------CGCAGUAGUug--AUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 70320 0.66 0.957448
Target:  5'- gGCCGCcaaGCGCGagCAcgCGgACUGCGGCg -3'
miRNA:   3'- -CGGCGcg-CGCGCa-GUa-GU-UGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 118833 0.66 0.957448
Target:  5'- uGCCGCGCGaaGCGUaCGaCGAgUGCAu- -3'
miRNA:   3'- -CGGCGCGCg-CGCA-GUaGUUgAUGUug -5'
6928 5' -53.3 NC_001875.2 + 55113 0.66 0.957448
Target:  5'- cGUCgGCGUcCGCGUCAcCGACgcuCAGCg -3'
miRNA:   3'- -CGG-CGCGcGCGCAGUaGUUGau-GUUG- -5'
6928 5' -53.3 NC_001875.2 + 55396 0.66 0.957448
Target:  5'- gGCCGCcaGCGCGCcccccgaUAUUGAcCUGCAGCa -3'
miRNA:   3'- -CGGCG--CGCGCGca-----GUAGUU-GAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 2870 0.66 0.957448
Target:  5'- --gGCGaGCGCGUCAUCcGCUcgccCAGCu -3'
miRNA:   3'- cggCGCgCGCGCAGUAGuUGAu---GUUG- -5'
6928 5' -53.3 NC_001875.2 + 71967 0.66 0.957448
Target:  5'- cGCCGCGaaGCuCGUCcAUCAGCUuGCAcGCg -3'
miRNA:   3'- -CGGCGCg-CGcGCAG-UAGUUGA-UGU-UG- -5'
6928 5' -53.3 NC_001875.2 + 113570 0.66 0.957448
Target:  5'- gGUCGCGCacgGCGCGcCAUugggcCAGC-ACGGCg -3'
miRNA:   3'- -CGGCGCG---CGCGCaGUA-----GUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 74115 0.66 0.957448
Target:  5'- cGCCGCGCGacuuuGCGgUGUCGcGCgACGACg -3'
miRNA:   3'- -CGGCGCGCg----CGCaGUAGU-UGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 79882 0.66 0.957448
Target:  5'- -aCGCGCGCGCGUg--CGGC-ACGucGCg -3'
miRNA:   3'- cgGCGCGCGCGCAguaGUUGaUGU--UG- -5'
6928 5' -53.3 NC_001875.2 + 117938 0.66 0.9551
Target:  5'- gGCCgGCGUGCGCGcCgccgcguuugguuugGUCGACgACAAg -3'
miRNA:   3'- -CGG-CGCGCGCGCaG---------------UAGUUGaUGUUg -5'
6928 5' -53.3 NC_001875.2 + 105063 0.66 0.953487
Target:  5'- cUCGaCG-GCGCGUCGcUCAacgaguGCUACGGCg -3'
miRNA:   3'- cGGC-GCgCGCGCAGU-AGU------UGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 98857 0.66 0.953487
Target:  5'- nCCGCgagcgcaacaccGUGCGCGUCGUaAACacggGCGACa -3'
miRNA:   3'- cGGCG------------CGCGCGCAGUAgUUGa---UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 61522 0.66 0.953487
Target:  5'- uCCGCGUGCucgcgcuugGCGgcCAUCAugUGgGACa -3'
miRNA:   3'- cGGCGCGCG---------CGCa-GUAGUugAUgUUG- -5'
6928 5' -53.3 NC_001875.2 + 30522 0.66 0.953487
Target:  5'- -gCGCGUGCuauuuuuaGCGgugCGUCAGCgGCGACc -3'
miRNA:   3'- cgGCGCGCG--------CGCa--GUAGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 30456 0.66 0.953487
Target:  5'- -gCGCGUGCuauuuuuaGCGgugCGUCAGCgGCGACc -3'
miRNA:   3'- cgGCGCGCG--------CGCa--GUAGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 30654 0.66 0.953487
Target:  5'- -gCGCGUGCuauuuuuaGCGgugCGUCAGCgGCGACc -3'
miRNA:   3'- cgGCGCGCG--------CGCa--GUAGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 30390 0.66 0.953487
Target:  5'- -gCGCGUGCuauuuuuaGCGgugCGUCAGCgGCGACc -3'
miRNA:   3'- cgGCGCGCG--------CGCa--GUAGUUGaUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.