Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
693 | 3' | -52 | AC_000018.1 | + | 23798 | 1.08 | 0.001151 |
Target: 5'- cCAUCACUGCCAACAUCGCUGCAAGCGc -3' miRNA: 3'- -GUAGUGACGGUUGUAGCGACGUUCGC- -5' |
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693 | 3' | -52 | AC_000018.1 | + | 1037 | 0.7 | 0.524194 |
Target: 5'- uGUCcggaGCUGCCugGACAUgGCUGUAAGUc -3' miRNA: 3'- gUAG----UGACGG--UUGUAgCGACGUUCGc -5' |
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693 | 3' | -52 | AC_000018.1 | + | 12167 | 0.69 | 0.547004 |
Target: 5'- aGUCGCaggGCCAugGagGCUGCAGGg- -3' miRNA: 3'- gUAGUGa--CGGUugUagCGACGUUCgc -5' |
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693 | 3' | -52 | AC_000018.1 | + | 5897 | 0.67 | 0.65229 |
Target: 5'- -cUCACUGUCuuccGgAUCGCUGUccagGAGCGc -3' miRNA: 3'- guAGUGACGGu---UgUAGCGACG----UUCGC- -5' |
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693 | 3' | -52 | AC_000018.1 | + | 33226 | 0.67 | 0.699033 |
Target: 5'- --aCACUGCCAACAcCGCucccccagccaUGCAuugaAGUGa -3' miRNA: 3'- guaGUGACGGUUGUaGCG-----------ACGU----UCGC- -5' |
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693 | 3' | -52 | AC_000018.1 | + | 27646 | 0.66 | 0.733354 |
Target: 5'- --cCACUGCCGccGCuuUCGCUGCuucGCc -3' miRNA: 3'- guaGUGACGGU--UGu-AGCGACGuu-CGc -5' |
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693 | 3' | -52 | AC_000018.1 | + | 28865 | 0.66 | 0.755677 |
Target: 5'- aAUUAUUGCCAACAuugucacugUCGCUcaCGGGCa -3' miRNA: 3'- gUAGUGACGGUUGU---------AGCGAc-GUUCGc -5' |
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693 | 3' | -52 | AC_000018.1 | + | 17900 | 0.66 | 0.755677 |
Target: 5'- -cUCG-UGCCGAUGUCGCUcCAGGUGc -3' miRNA: 3'- guAGUgACGGUUGUAGCGAcGUUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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