miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6932 3' -53.3 NC_001875.2 + 45622 0.67 0.936998
Target:  5'- cUCcAACaccaGCCGCaAGUUgUGCGGCGGc -3'
miRNA:   3'- -AGcUUGag--CGGCG-UCAAaACGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 49998 0.67 0.936998
Target:  5'- gCGGcGCUUGUCGCGGUUgggGCGcGCGu -3'
miRNA:   3'- aGCU-UGAGCGGCGUCAAaa-CGC-CGUc -5'
6932 3' -53.3 NC_001875.2 + 36091 0.67 0.936998
Target:  5'- aCGcGCUCGCgCgGCAGcacgcgGCGGCGGc -3'
miRNA:   3'- aGCuUGAGCG-G-CGUCaaaa--CGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 89779 0.67 0.936497
Target:  5'- gCGAcgcGCUCGUgcacgugcgcgaaCGCAGcgcggGCGGCAGa -3'
miRNA:   3'- aGCU---UGAGCG-------------GCGUCaaaa-CGCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 43662 0.67 0.931876
Target:  5'- gUCGGGCa-GCgGCAcGUUUUGUGGUAa -3'
miRNA:   3'- -AGCUUGagCGgCGU-CAAAACGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 56897 0.67 0.931876
Target:  5'- gUCGuAC-CGCCGCAGca--GCGGCu- -3'
miRNA:   3'- -AGCuUGaGCGGCGUCaaaaCGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 102435 0.67 0.9265
Target:  5'- aCGAGgUgCGCUGCGcGUUUUGCaaGGUAGa -3'
miRNA:   3'- aGCUUgA-GCGGCGU-CAAAACG--CCGUC- -5'
6932 3' -53.3 NC_001875.2 + 73844 0.67 0.9265
Target:  5'- uUCGAGCaagCGCUGguGccguuggUGCGGCGc -3'
miRNA:   3'- -AGCUUGa--GCGGCguCaaa----ACGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 2453 0.67 0.920871
Target:  5'- aCGuAAC-CGUCGCGGUUguaggcGCGGCAc -3'
miRNA:   3'- aGC-UUGaGCGGCGUCAAaa----CGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 10390 0.67 0.920871
Target:  5'- uUUGAACgcCGCCGCGccGUggcGCGGCAc -3'
miRNA:   3'- -AGCUUGa-GCGGCGU--CAaaaCGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 43758 0.67 0.920871
Target:  5'- gUCGGGCaacaCGaCGCAGUUgUGCGGCc- -3'
miRNA:   3'- -AGCUUGa---GCgGCGUCAAaACGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 113120 0.68 0.902465
Target:  5'- uUUGGGCgCGCUGUuGUUgUGCGGCAc -3'
miRNA:   3'- -AGCUUGaGCGGCGuCAAaACGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 35844 0.68 0.902465
Target:  5'- gUCGcACUCGacgaCGCGGUUUUGuUGcGCAGc -3'
miRNA:   3'- -AGCuUGAGCg---GCGUCAAAAC-GC-CGUC- -5'
6932 3' -53.3 NC_001875.2 + 66174 0.68 0.902465
Target:  5'- aUCGGGCUgGUCGCG--UUUGUGGCc- -3'
miRNA:   3'- -AGCUUGAgCGGCGUcaAAACGCCGuc -5'
6932 3' -53.3 NC_001875.2 + 116130 0.68 0.895831
Target:  5'- cUCGcacacCUCGCCGCAGUcaaacaUG-GGCAGg -3'
miRNA:   3'- -AGCuu---GAGCGGCGUCAaa----ACgCCGUC- -5'
6932 3' -53.3 NC_001875.2 + 39648 0.68 0.895831
Target:  5'- gCGAAC-CGCgCGCgAGUUUgggccgGCGGCGc -3'
miRNA:   3'- aGCUUGaGCG-GCG-UCAAAa-----CGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 16071 0.68 0.888953
Target:  5'- cUCGAggacgGCUCGCgGCGGUUUgaaaUGCGcuGCAa -3'
miRNA:   3'- -AGCU-----UGAGCGgCGUCAAA----ACGC--CGUc -5'
6932 3' -53.3 NC_001875.2 + 91772 0.68 0.888953
Target:  5'- gCGGcCUCGUCGUAGU---GCGGCGu -3'
miRNA:   3'- aGCUuGAGCGGCGUCAaaaCGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 33228 0.68 0.881834
Target:  5'- gCGGGCUCGCCGgGcgccGUUUcggcGCGGCGc -3'
miRNA:   3'- aGCUUGAGCGGCgU----CAAAa---CGCCGUc -5'
6932 3' -53.3 NC_001875.2 + 11860 0.68 0.881834
Target:  5'- aCGAGCggGuCCGaaCAGUUUgUGCGGCAGc -3'
miRNA:   3'- aGCUUGagC-GGC--GUCAAA-ACGCCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.