miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6932 5' -56.6 NC_001875.2 + 2249 0.66 0.845166
Target:  5'- uGCCGCaGCAacuggcugUCGCUGCGGGCc---- -3'
miRNA:   3'- gCGGCG-CGUa-------GGUGACGUCCGaaagg -5'
6932 5' -56.6 NC_001875.2 + 23165 0.66 0.845166
Target:  5'- gGCUGCggGCAcggCgGCUGCGGGCacggCCg -3'
miRNA:   3'- gCGGCG--CGUa--GgUGACGUCCGaaa-GG- -5'
6932 5' -56.6 NC_001875.2 + 14504 0.66 0.842727
Target:  5'- -cCCGCGCuuauUCCGCUgucgggggaacuugGCGGGCacgCCg -3'
miRNA:   3'- gcGGCGCGu---AGGUGA--------------CGUCCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 110812 0.66 0.836968
Target:  5'- aCGCCGCGCAgguggaCGC-GCuGGUgcgCCg -3'
miRNA:   3'- -GCGGCGCGUag----GUGaCGuCCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 65552 0.66 0.836968
Target:  5'- gGCCGCGCAUUUgAC-GCAGaGCgcgugCCa -3'
miRNA:   3'- gCGGCGCGUAGG-UGaCGUC-CGaaa--GG- -5'
6932 5' -56.6 NC_001875.2 + 124588 0.66 0.82858
Target:  5'- -cCCGCGCcaggCCGCUGCAGcGCg---- -3'
miRNA:   3'- gcGGCGCGua--GGUGACGUC-CGaaagg -5'
6932 5' -56.6 NC_001875.2 + 118928 0.66 0.82858
Target:  5'- aCGCUGCaCAUCCACggGCcGGCg--CUa -3'
miRNA:   3'- -GCGGCGcGUAGGUGa-CGuCCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 126977 0.66 0.82858
Target:  5'- gCGCCGCaGCGUgCACgagcugUGCAcGCgUUCCg -3'
miRNA:   3'- -GCGGCG-CGUAgGUG------ACGUcCGaAAGG- -5'
6932 5' -56.6 NC_001875.2 + 21100 0.66 0.82858
Target:  5'- uCGCCGCGCuuaaACUGCAcGCgccCCg -3'
miRNA:   3'- -GCGGCGCGuaggUGACGUcCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 114084 0.66 0.82858
Target:  5'- aCGCCGcCGUGUCCACaagcgGCAuGGCg---- -3'
miRNA:   3'- -GCGGC-GCGUAGGUGa----CGU-CCGaaagg -5'
6932 5' -56.6 NC_001875.2 + 28929 0.66 0.827731
Target:  5'- gGCCGCGUAUUUcgagagugggGCgUGUAcggccgcGGCUUUCCg -3'
miRNA:   3'- gCGGCGCGUAGG----------UG-ACGU-------CCGAAAGG- -5'
6932 5' -56.6 NC_001875.2 + 60282 0.66 0.82688
Target:  5'- uGCgGCGCAcuuguuggcgaCACUGCAGGCgacgcgUCg -3'
miRNA:   3'- gCGgCGCGUag---------GUGACGUCCGaa----AGg -5'
6932 5' -56.6 NC_001875.2 + 96209 0.67 0.82001
Target:  5'- gCGCUGCGCcagauaGUCCGCgucgGCguuGGGCgcgUUCa -3'
miRNA:   3'- -GCGGCGCG------UAGGUGa---CG---UCCGa--AAGg -5'
6932 5' -56.6 NC_001875.2 + 43342 0.67 0.82001
Target:  5'- cCGCCGCGCA-CCAC-GUAcuuGCgcUCCa -3'
miRNA:   3'- -GCGGCGCGUaGGUGaCGUc--CGaaAGG- -5'
6932 5' -56.6 NC_001875.2 + 88271 0.67 0.814785
Target:  5'- uCGCCGCcaGCAUgaCGCUgGCGGGCgacgcggugauugUCCg -3'
miRNA:   3'- -GCGGCG--CGUAg-GUGA-CGUCCGaa-----------AGG- -5'
6932 5' -56.6 NC_001875.2 + 57750 0.67 0.811267
Target:  5'- gCGUCGCuGC--CCaACUGCAGGUUUUgCg -3'
miRNA:   3'- -GCGGCG-CGuaGG-UGACGUCCGAAAgG- -5'
6932 5' -56.6 NC_001875.2 + 18167 0.67 0.811267
Target:  5'- gCGCgCGaCGCcgCCACUGU-GGCggugCCg -3'
miRNA:   3'- -GCG-GC-GCGuaGGUGACGuCCGaaa-GG- -5'
6932 5' -56.6 NC_001875.2 + 56248 0.67 0.811267
Target:  5'- aCGCCgGCGCG-CgGCUGCAGuaCUUUgCCg -3'
miRNA:   3'- -GCGG-CGCGUaGgUGACGUCc-GAAA-GG- -5'
6932 5' -56.6 NC_001875.2 + 95992 0.67 0.811267
Target:  5'- gCGCCGUGCAguaCC-CUGCAaaaGGCca-CCa -3'
miRNA:   3'- -GCGGCGCGUa--GGuGACGU---CCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 118326 0.67 0.811267
Target:  5'- gGCCGCGC----GCUGCAGGUgaugaaCCu -3'
miRNA:   3'- gCGGCGCGuaggUGACGUCCGaaa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.