miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6933 3' -55.2 NC_001875.2 + 45095 0.66 0.905563
Target:  5'- aGCgGUGCCCGac--GUGC-GCGCCu -3'
miRNA:   3'- gUGgCACGGGCguuuCAUGaCGUGGu -5'
6933 3' -55.2 NC_001875.2 + 15792 0.66 0.905563
Target:  5'- gCACaa-GCUgGCGgugggcGGGUACUGCACCAc -3'
miRNA:   3'- -GUGgcaCGGgCGU------UUCAUGACGUGGU- -5'
6933 3' -55.2 NC_001875.2 + 121181 0.66 0.89909
Target:  5'- gCGCCaaGUGCaguCCGCcgcccAAGUACUGCACg- -3'
miRNA:   3'- -GUGG--CACG---GGCGu----UUCAUGACGUGgu -5'
6933 3' -55.2 NC_001875.2 + 37384 0.66 0.89909
Target:  5'- -cCCGggcaGCCaGCAgaccGAGUugUGCGCCGa -3'
miRNA:   3'- guGGCa---CGGgCGU----UUCAugACGUGGU- -5'
6933 3' -55.2 NC_001875.2 + 73022 0.66 0.89909
Target:  5'- uCGCCGuUGCCCGCcuGGUAgUUGUugUc -3'
miRNA:   3'- -GUGGC-ACGGGCGuuUCAU-GACGugGu -5'
6933 3' -55.2 NC_001875.2 + 64930 0.66 0.897101
Target:  5'- aCAUUGUGCgccauuugauugggCUGCAgaAAGaGCUGCGCCAa -3'
miRNA:   3'- -GUGGCACG--------------GGCGU--UUCaUGACGUGGU- -5'
6933 3' -55.2 NC_001875.2 + 19412 0.66 0.897101
Target:  5'- uGCCGgGCgcaaacaacgacuaCCGCAuuGUGCUGCgGCCGc -3'
miRNA:   3'- gUGGCaCG--------------GGCGUuuCAUGACG-UGGU- -5'
6933 3' -55.2 NC_001875.2 + 107825 0.66 0.892375
Target:  5'- cCGCCGaGCCCGCGccc-GgUGCGCCu -3'
miRNA:   3'- -GUGGCaCGGGCGUuucaUgACGUGGu -5'
6933 3' -55.2 NC_001875.2 + 98038 0.66 0.892375
Target:  5'- gCGCCGUGCgCCGaCGGGcaAgUGCGCCu -3'
miRNA:   3'- -GUGGCACG-GGC-GUUUcaUgACGUGGu -5'
6933 3' -55.2 NC_001875.2 + 37708 0.66 0.892375
Target:  5'- aUugUGUGCCCGUu--GUcGCUGCucaACCAu -3'
miRNA:   3'- -GugGCACGGGCGuuuCA-UGACG---UGGU- -5'
6933 3' -55.2 NC_001875.2 + 83307 0.66 0.892375
Target:  5'- aGCCGUuaaauaCCCGCGGGGcGC-GCGCCGg -3'
miRNA:   3'- gUGGCAc-----GGGCGUUUCaUGaCGUGGU- -5'
6933 3' -55.2 NC_001875.2 + 86975 0.66 0.892375
Target:  5'- aACUGUGCUgGuCAAAGUACUugGCCGu -3'
miRNA:   3'- gUGGCACGGgC-GUUUCAUGAcgUGGU- -5'
6933 3' -55.2 NC_001875.2 + 56709 0.66 0.892375
Target:  5'- gGCCGagGCCgCGCGAAacGUACgcgGUGCCGu -3'
miRNA:   3'- gUGGCa-CGG-GCGUUU--CAUGa--CGUGGU- -5'
6933 3' -55.2 NC_001875.2 + 39391 0.66 0.88542
Target:  5'- cCACuCGUGCCUGUgcaccgACUGCgACCAg -3'
miRNA:   3'- -GUG-GCACGGGCGuuuca-UGACG-UGGU- -5'
6933 3' -55.2 NC_001875.2 + 77722 0.66 0.87823
Target:  5'- gACCGgGCCCGUuugucauGUACgUGCGCUg -3'
miRNA:   3'- gUGGCaCGGGCGuuu----CAUG-ACGUGGu -5'
6933 3' -55.2 NC_001875.2 + 32066 0.66 0.87823
Target:  5'- cCGCCGacagguaGCCCGCAAca-ACgGCGCCAa -3'
miRNA:   3'- -GUGGCa------CGGGCGUUucaUGaCGUGGU- -5'
6933 3' -55.2 NC_001875.2 + 21006 0.66 0.87823
Target:  5'- aGCUGUuuGCCCGCAuaaauAAGUcucuGCUGguCCAc -3'
miRNA:   3'- gUGGCA--CGGGCGU-----UUCA----UGACguGGU- -5'
6933 3' -55.2 NC_001875.2 + 50800 0.66 0.87823
Target:  5'- aCGCCGUGCuuGCAuauggagauGUACUuGUagACCGg -3'
miRNA:   3'- -GUGGCACGggCGUuu-------CAUGA-CG--UGGU- -5'
6933 3' -55.2 NC_001875.2 + 99705 0.67 0.873805
Target:  5'- cCGCCGUugagcgcuaugcggcGCUCGC-AAGUGC-GCGCCu -3'
miRNA:   3'- -GUGGCA---------------CGGGCGuUUCAUGaCGUGGu -5'
6933 3' -55.2 NC_001875.2 + 49110 0.67 0.87081
Target:  5'- --aCGUGCgCGUAAAGcGCUGCcCCGu -3'
miRNA:   3'- gugGCACGgGCGUUUCaUGACGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.