miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6933 5' -55.2 NC_001875.2 + 108753 0.66 0.926604
Target:  5'- gGGCAgcugcACGCGGCGCGGgu-UGcCGGUUUg -3'
miRNA:   3'- -CCGU-----UGUGCUGCGUCaacAC-GCCGGG- -5'
6933 5' -55.2 NC_001875.2 + 36588 0.66 0.926604
Target:  5'- uGCAaaAUGCGGCGCAGccGcUGCGcgucGCCCu -3'
miRNA:   3'- cCGU--UGUGCUGCGUCaaC-ACGC----CGGG- -5'
6933 5' -55.2 NC_001875.2 + 9674 0.66 0.926604
Target:  5'- aGCuGCGCGGCGCuGUcgaaaaaauUGUGCGcGUgCa -3'
miRNA:   3'- cCGuUGUGCUGCGuCA---------ACACGC-CGgG- -5'
6933 5' -55.2 NC_001875.2 + 100182 0.66 0.926065
Target:  5'- aGCGGCAUGaaaagcGCGCcGUUGUGCGacaacuuGCUCg -3'
miRNA:   3'- cCGUUGUGC------UGCGuCAACACGC-------CGGG- -5'
6933 5' -55.2 NC_001875.2 + 14588 0.66 0.92498
Target:  5'- cGGCAGCGacaGAcugaacgagaucucCGcCAGUuuUGUGCcGCCCg -3'
miRNA:   3'- -CCGUUGUg--CU--------------GC-GUCA--ACACGcCGGG- -5'
6933 5' -55.2 NC_001875.2 + 93785 0.66 0.923334
Target:  5'- cGGCAGCGCaaaaaguggaugauGGCGUcaugucccagugccGGUUGUggauggGCGuGCCCg -3'
miRNA:   3'- -CCGUUGUG--------------CUGCG--------------UCAACA------CGC-CGGG- -5'
6933 5' -55.2 NC_001875.2 + 89015 0.66 0.921105
Target:  5'- cGCuACGCGugcgaGCGCaAGUUGUcauucaGCGuGCCCg -3'
miRNA:   3'- cCGuUGUGC-----UGCG-UCAACA------CGC-CGGG- -5'
6933 5' -55.2 NC_001875.2 + 43554 0.66 0.921105
Target:  5'- uGGCGA-ACGugGCGGg---GCGGCg- -3'
miRNA:   3'- -CCGUUgUGCugCGUCaacaCGCCGgg -5'
6933 5' -55.2 NC_001875.2 + 77308 0.66 0.921105
Target:  5'- aGCAGUACGccgaguACGCGGcgGUGgcCGGCCCc -3'
miRNA:   3'- cCGUUGUGC------UGCGUCaaCAC--GCCGGG- -5'
6933 5' -55.2 NC_001875.2 + 86137 0.66 0.921105
Target:  5'- cGGCAguGCGCGGCGCGc----GCGGCg- -3'
miRNA:   3'- -CCGU--UGUGCUGCGUcaacaCGCCGgg -5'
6933 5' -55.2 NC_001875.2 + 29753 0.66 0.921105
Target:  5'- -cCGACACuGACGCuGUuacUGUGCucGCCCc -3'
miRNA:   3'- ccGUUGUG-CUGCGuCA---ACACGc-CGGG- -5'
6933 5' -55.2 NC_001875.2 + 54051 0.66 0.921105
Target:  5'- cGGUgccgAACACGaggucgGCGCAGUUGUagaaGCcuucGCCCa -3'
miRNA:   3'- -CCG----UUGUGC------UGCGUCAACA----CGc---CGGG- -5'
6933 5' -55.2 NC_001875.2 + 21352 0.66 0.921105
Target:  5'- aGCAGCGCcgugugcuuGACGCGGUacuUGCGGUUg -3'
miRNA:   3'- cCGUUGUG---------CUGCGUCAac-ACGCCGGg -5'
6933 5' -55.2 NC_001875.2 + 60546 0.66 0.921105
Target:  5'- cGGCcaGGCACGugGCgAGUUG-GUcgaaauccauGGCCa -3'
miRNA:   3'- -CCG--UUGUGCugCG-UCAACaCG----------CCGGg -5'
6933 5' -55.2 NC_001875.2 + 42745 0.66 0.921105
Target:  5'- cGGCGACGCGcAUGguGa---GCGGCgCg -3'
miRNA:   3'- -CCGUUGUGC-UGCguCaacaCGCCGgG- -5'
6933 5' -55.2 NC_001875.2 + 65782 0.66 0.921105
Target:  5'- cGGCGGCGCGuCGUcGUUGaGC-GCCa -3'
miRNA:   3'- -CCGUUGUGCuGCGuCAACaCGcCGGg -5'
6933 5' -55.2 NC_001875.2 + 37086 0.66 0.921105
Target:  5'- uGGCGGacgacaccgcCGCGugGguGUgcggGcGCGGCgCCg -3'
miRNA:   3'- -CCGUU----------GUGCugCguCAa---CaCGCCG-GG- -5'
6933 5' -55.2 NC_001875.2 + 119412 0.66 0.917112
Target:  5'- cGCGGCGCGcACGCAacggccuGcUUGgcgcgcggcaaacaGCGGCCCg -3'
miRNA:   3'- cCGUUGUGC-UGCGU-------C-AACa-------------CGCCGGG- -5'
6933 5' -55.2 NC_001875.2 + 29299 0.66 0.915364
Target:  5'- ---uGCACGACGCGGacaaGCGGCgCg -3'
miRNA:   3'- ccguUGUGCUGCGUCaacaCGCCGgG- -5'
6933 5' -55.2 NC_001875.2 + 85814 0.66 0.915364
Target:  5'- aGCAuuucCGCGGCGcCAGcugcgUGgGCGGCCg -3'
miRNA:   3'- cCGUu---GUGCUGC-GUCa----ACaCGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.