miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6934 3' -54.9 NC_001875.2 + 98350 0.66 0.926035
Target:  5'- cAAUCgGUUGGCGcaccccaGCGCG-CGgCGCGCc -3'
miRNA:   3'- aUUAG-CGACCGCa------UGUGCaGC-GCGCG- -5'
6934 3' -54.9 NC_001875.2 + 71539 0.66 0.926035
Target:  5'- ---cCGCU-GCG-ACGCGUCGCcUGCa -3'
miRNA:   3'- auuaGCGAcCGCaUGUGCAGCGcGCG- -5'
6934 3' -54.9 NC_001875.2 + 96974 0.66 0.926035
Target:  5'- ---aCGCU---GUGgACGUCGUGCGCa -3'
miRNA:   3'- auuaGCGAccgCAUgUGCAGCGCGCG- -5'
6934 3' -54.9 NC_001875.2 + 124899 0.66 0.926035
Target:  5'- -uGUCGC-GGCGcacGCACGaCGCGuUGCu -3'
miRNA:   3'- auUAGCGaCCGCa--UGUGCaGCGC-GCG- -5'
6934 3' -54.9 NC_001875.2 + 49942 0.66 0.926035
Target:  5'- cUAAUCaGCUGGuCGUcggaGC-UG-CGCGCGCu -3'
miRNA:   3'- -AUUAG-CGACC-GCA----UGuGCaGCGCGCG- -5'
6934 3' -54.9 NC_001875.2 + 47674 0.66 0.926035
Target:  5'- ---aCGC-GGCcgcgGCGCGcCGCGCGUu -3'
miRNA:   3'- auuaGCGaCCGca--UGUGCaGCGCGCG- -5'
6934 3' -54.9 NC_001875.2 + 26829 0.66 0.926035
Target:  5'- ---aCG-UGGCGUuuuCGUCGCGCuGCu -3'
miRNA:   3'- auuaGCgACCGCAuguGCAGCGCG-CG- -5'
6934 3' -54.9 NC_001875.2 + 60377 0.66 0.926035
Target:  5'- gAAUCGUUGGCGcGCACGaUgGC-CGa -3'
miRNA:   3'- aUUAGCGACCGCaUGUGC-AgCGcGCg -5'
6934 3' -54.9 NC_001875.2 + 76516 0.66 0.926035
Target:  5'- ----aGCgGcGCGUcauCAcCGUCGCGCGCc -3'
miRNA:   3'- auuagCGaC-CGCAu--GU-GCAGCGCGCG- -5'
6934 3' -54.9 NC_001875.2 + 125989 0.66 0.926035
Target:  5'- cGcgUGCUGGUGcacugcUACGCGg-GCGCGUc -3'
miRNA:   3'- aUuaGCGACCGC------AUGUGCagCGCGCG- -5'
6934 3' -54.9 NC_001875.2 + 110571 0.66 0.926035
Target:  5'- -uGUCGUgcuCGUAgcCGCGcCGCGCGCg -3'
miRNA:   3'- auUAGCGaccGCAU--GUGCaGCGCGCG- -5'
6934 3' -54.9 NC_001875.2 + 72574 0.66 0.926035
Target:  5'- ---gCGCgGGCGcUGCGgGUgCGgGCGCu -3'
miRNA:   3'- auuaGCGaCCGC-AUGUgCA-GCgCGCG- -5'
6934 3' -54.9 NC_001875.2 + 128804 0.66 0.925488
Target:  5'- uUAcgCGCUgcccaacGGCGUguacaacuuGCACGgCGaCGCGCa -3'
miRNA:   3'- -AUuaGCGA-------CCGCA---------UGUGCaGC-GCGCG- -5'
6934 3' -54.9 NC_001875.2 + 94476 0.66 0.925488
Target:  5'- ----aGC-GGCGcGCGCGUUcgcacgaGCGCGCg -3'
miRNA:   3'- auuagCGaCCGCaUGUGCAG-------CGCGCG- -5'
6934 3' -54.9 NC_001875.2 + 54614 0.66 0.920458
Target:  5'- -uAUCGgUGGaacacuuuuuUGUACGCGUUGCG-GCa -3'
miRNA:   3'- auUAGCgACC----------GCAUGUGCAGCGCgCG- -5'
6934 3' -54.9 NC_001875.2 + 62204 0.66 0.920458
Target:  5'- ----gGCUgaggccgacGGCGUcCACcUCGCGCGCc -3'
miRNA:   3'- auuagCGA---------CCGCAuGUGcAGCGCGCG- -5'
6934 3' -54.9 NC_001875.2 + 126615 0.66 0.920458
Target:  5'- ----gGCUGGUGgcGCaugucgaucgugGCGUCGgGCGCg -3'
miRNA:   3'- auuagCGACCGCa-UG------------UGCAGCgCGCG- -5'
6934 3' -54.9 NC_001875.2 + 33489 0.66 0.920458
Target:  5'- cGcgCGCUGGgGUGCGCcaaccgauuGUacaCGCaGCGCg -3'
miRNA:   3'- aUuaGCGACCgCAUGUG---------CA---GCG-CGCG- -5'
6934 3' -54.9 NC_001875.2 + 63683 0.66 0.920458
Target:  5'- ---cUGCUuaaugaggGGCGcGCACGagGUGCGCg -3'
miRNA:   3'- auuaGCGA--------CCGCaUGUGCagCGCGCG- -5'
6934 3' -54.9 NC_001875.2 + 37101 0.66 0.920458
Target:  5'- ---cCGCgugGGUGUGCGgG-CGCgGCGCc -3'
miRNA:   3'- auuaGCGa--CCGCAUGUgCaGCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.