miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6934 5' -55.3 NC_001875.2 + 9697 0.66 0.922156
Target:  5'- gGgGC-UCGCC--GUCGUgcGCGCCGGCc -3'
miRNA:   3'- -CgCGcAGCGGaaCAGCA--UGUGGUCGa -5'
6934 5' -55.3 NC_001875.2 + 93972 0.66 0.922156
Target:  5'- gGCGCGgccCGCCguuuuguaauguUUGUgGUGCGCgcgCAGCg -3'
miRNA:   3'- -CGCGCa--GCGG------------AACAgCAUGUG---GUCGa -5'
6934 5' -55.3 NC_001875.2 + 101895 0.66 0.922156
Target:  5'- aGCGcCGUCGCCU--UCGgcUGCCugGGCg -3'
miRNA:   3'- -CGC-GCAGCGGAacAGCauGUGG--UCGa -5'
6934 5' -55.3 NC_001875.2 + 124788 0.66 0.922156
Target:  5'- aGCGCG-CGgaUuaUGUCuUGCACCAGCg -3'
miRNA:   3'- -CGCGCaGCggA--ACAGcAUGUGGUCGa -5'
6934 5' -55.3 NC_001875.2 + 40183 0.66 0.922156
Target:  5'- uGgGCGU-GCCguacgCGUACGgCCAGCUg -3'
miRNA:   3'- -CgCGCAgCGGaaca-GCAUGU-GGUCGA- -5'
6934 5' -55.3 NC_001875.2 + 91204 0.66 0.922156
Target:  5'- gGCGCGUgCGCgcccaguugagCUUGUUGUACA--GGCUg -3'
miRNA:   3'- -CGCGCA-GCG-----------GAACAGCAUGUggUCGA- -5'
6934 5' -55.3 NC_001875.2 + 22714 0.66 0.922156
Target:  5'- -aGuCGUCGCCacugUGgccuacUUGUGCGCCGGCc -3'
miRNA:   3'- cgC-GCAGCGGa---AC------AGCAUGUGGUCGa -5'
6934 5' -55.3 NC_001875.2 + 50156 0.66 0.919898
Target:  5'- gGCGCGccuucugcauggcCGCCUcuUCGU-CGCCGGCg -3'
miRNA:   3'- -CGCGCa------------GCGGAacAGCAuGUGGUCGa -5'
6934 5' -55.3 NC_001875.2 + 85813 0.66 0.918755
Target:  5'- cGCGCG-CGUgUUgaauaaaaucagcacGUCGUGCACC-GCg -3'
miRNA:   3'- -CGCGCaGCGgAA---------------CAGCAUGUGGuCGa -5'
6934 5' -55.3 NC_001875.2 + 59586 0.66 0.916439
Target:  5'- uGCaGCGUgGCCga--CGUGCGCgAGCa -3'
miRNA:   3'- -CG-CGCAgCGGaacaGCAUGUGgUCGa -5'
6934 5' -55.3 NC_001875.2 + 128298 0.66 0.916439
Target:  5'- cGCGCcacggCGCCggUGaCGUGCGCCAaauGCg -3'
miRNA:   3'- -CGCGca---GCGGa-ACaGCAUGUGGU---CGa -5'
6934 5' -55.3 NC_001875.2 + 84647 0.66 0.916439
Target:  5'- cGCGCGUgugcuccagcagCGCCUUGcauUCGUGCAgCguugguGGCg -3'
miRNA:   3'- -CGCGCA------------GCGGAAC---AGCAUGUgG------UCGa -5'
6934 5' -55.3 NC_001875.2 + 65803 0.66 0.916439
Target:  5'- cGCGCGgUGCCUg--CGcgGCGCCAaGCg -3'
miRNA:   3'- -CGCGCaGCGGAacaGCa-UGUGGU-CGa -5'
6934 5' -55.3 NC_001875.2 + 84574 0.66 0.916439
Target:  5'- aGCGCGUC-CUcgGUCGUG-ACCcGCUg -3'
miRNA:   3'- -CGCGCAGcGGaaCAGCAUgUGGuCGA- -5'
6934 5' -55.3 NC_001875.2 + 71955 0.66 0.916439
Target:  5'- cGCGCagccuGUCGCCgcgaagcUCGUcCAUCAGCUu -3'
miRNA:   3'- -CGCG-----CAGCGGaac----AGCAuGUGGUCGA- -5'
6934 5' -55.3 NC_001875.2 + 66373 0.66 0.916439
Target:  5'- cCGC-UUGCCUUGcugCGUG-GCCAGCUg -3'
miRNA:   3'- cGCGcAGCGGAACa--GCAUgUGGUCGA- -5'
6934 5' -55.3 NC_001875.2 + 54107 0.66 0.910479
Target:  5'- uGCuGCGcCGCCgaauUGcgcgUGUACACUAGCg -3'
miRNA:   3'- -CG-CGCaGCGGa---ACa---GCAUGUGGUCGa -5'
6934 5' -55.3 NC_001875.2 + 3810 0.66 0.910479
Target:  5'- -aGCGUCGaCCaccggccGUCGUcggcgcACGCCGGCg -3'
miRNA:   3'- cgCGCAGC-GGaa-----CAGCA------UGUGGUCGa -5'
6934 5' -55.3 NC_001875.2 + 36631 0.66 0.910479
Target:  5'- aGCGCaacauggcuaCGCCggUGUCGUACucguuuguCCAGCg -3'
miRNA:   3'- -CGCGca--------GCGGa-ACAGCAUGu-------GGUCGa -5'
6934 5' -55.3 NC_001875.2 + 110176 0.66 0.910479
Target:  5'- gGCgGCGUCGCaCUgcgcUCGUccGCGCUGGCg -3'
miRNA:   3'- -CG-CGCAGCG-GAac--AGCA--UGUGGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.