miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 3' -63.9 NC_001875.2 + 81980 0.66 0.521765
Target:  5'- uGGCGCCgGCaAGgCGCGCcggCcGGCGc -3'
miRNA:   3'- gCCGCGGgCG-UCgGCGCGca-GaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 95306 0.66 0.521765
Target:  5'- aCGGUGCgCGcCAG-CGC-CGUUUGGCGa -3'
miRNA:   3'- -GCCGCGgGC-GUCgGCGcGCAGAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 1868 0.66 0.520827
Target:  5'- aGGCGCgUGCuauuuuuAGCaGUGCGUC-AGCGg -3'
miRNA:   3'- gCCGCGgGCG-------UCGgCGCGCAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 69601 0.66 0.518953
Target:  5'- uGGCGCUuuaCGCGGCgCGCGUccacccuguccaucGUCgcGCGg -3'
miRNA:   3'- gCCGCGG---GCGUCG-GCGCG--------------CAGauCGC- -5'
6935 3' -63.9 NC_001875.2 + 105424 0.66 0.512415
Target:  5'- aCGGCauGCUCGauugcauGCCG-GCGUUUGGCGa -3'
miRNA:   3'- -GCCG--CGGGCgu-----CGGCgCGCAGAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 124714 0.66 0.512415
Target:  5'- -cGCGCCUGgcaAGCgGCGCGU--GGCGg -3'
miRNA:   3'- gcCGCGGGCg--UCGgCGCGCAgaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 128782 0.66 0.512415
Target:  5'- cCGGCGCgCCGCuG-CGCGCcUCUuacGCGc -3'
miRNA:   3'- -GCCGCG-GGCGuCgGCGCGcAGAu--CGC- -5'
6935 3' -63.9 NC_001875.2 + 37888 0.66 0.512415
Target:  5'- -cGCGCCaGCGGCUugcugGCGCGgcaCUGGCa -3'
miRNA:   3'- gcCGCGGgCGUCGG-----CGCGCa--GAUCGc -5'
6935 3' -63.9 NC_001875.2 + 46628 0.66 0.512415
Target:  5'- gCGGCGCUaccgCGCGGCgGCcCGUC-GGCu -3'
miRNA:   3'- -GCCGCGG----GCGUCGgCGcGCAGaUCGc -5'
6935 3' -63.9 NC_001875.2 + 8515 0.66 0.512415
Target:  5'- gGGCGUgCGCucuGCCuGCGCGUCg---- -3'
miRNA:   3'- gCCGCGgGCGu--CGG-CGCGCAGaucgc -5'
6935 3' -63.9 NC_001875.2 + 80648 0.66 0.512415
Target:  5'- gCGGCGCcagaaCCGC-GCCGuCGUGggcaaaCUGGCGc -3'
miRNA:   3'- -GCCGCG-----GGCGuCGGC-GCGCa-----GAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 18162 0.66 0.511484
Target:  5'- gCGGCGCgCGCGacGCCGCcacugugGCGgugCcGGCGg -3'
miRNA:   3'- -GCCGCGgGCGU--CGGCG-------CGCa--GaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 63271 0.66 0.511484
Target:  5'- gCGGCGCCaCGCGgugcgcgaccgccGCCGCcGCGgc-GGCa -3'
miRNA:   3'- -GCCGCGG-GCGU-------------CGGCG-CGCagaUCGc -5'
6935 3' -63.9 NC_001875.2 + 31251 0.66 0.503135
Target:  5'- cCGGCGCCCG--GCC-CGCGUac-GCGu -3'
miRNA:   3'- -GCCGCGGGCguCGGcGCGCAgauCGC- -5'
6935 3' -63.9 NC_001875.2 + 89246 0.66 0.503135
Target:  5'- gCGGUGCCCaGC-GCCgagcugacgcGCGCGUgcgccgacCUGGCGc -3'
miRNA:   3'- -GCCGCGGG-CGuCGG----------CGCGCA--------GAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 61603 0.66 0.503135
Target:  5'- gGGCGCCgGCGGCgcuucggGCuGUGUC-GGCGg -3'
miRNA:   3'- gCCGCGGgCGUCGg------CG-CGCAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 42548 0.66 0.503135
Target:  5'- gCGGCGCCaUGCGGCCacuacacccuGUGUGUCacguGCa -3'
miRNA:   3'- -GCCGCGG-GCGUCGG----------CGCGCAGau--CGc -5'
6935 3' -63.9 NC_001875.2 + 65901 0.66 0.503135
Target:  5'- uGGUGCagaaaCCGCGGCUGCGCuuugaUCaGGCGc -3'
miRNA:   3'- gCCGCG-----GGCGUCGGCGCGc----AGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 48517 0.66 0.503135
Target:  5'- uGGCGCgCCGCccGgCGCGCGcCccGCGg -3'
miRNA:   3'- gCCGCG-GGCGu-CgGCGCGCaGauCGC- -5'
6935 3' -63.9 NC_001875.2 + 35388 0.66 0.503135
Target:  5'- aGGCGCugcuguCCGUGGCgCGCGCG---AGCGa -3'
miRNA:   3'- gCCGCG------GGCGUCG-GCGCGCagaUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.