miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 5' -54.6 NC_001875.2 + 1792 0.66 0.89475
Target:  5'- cGCCGCCGCCGC-CAUUUccGuCGGCGg -3'
miRNA:   3'- -UGGUGGUGGUGuGUGAAcaC-GUCGUg -5'
6935 5' -54.6 NC_001875.2 + 114467 0.66 0.89475
Target:  5'- uCCGCCACgUugGCGgUagagaUGUGCGGCAg -3'
miRNA:   3'- uGGUGGUG-GugUGUgA-----ACACGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 82993 0.66 0.89475
Target:  5'- cGCCGCUcgucGCCgGCGgGCUUGaaGCGGCGCc -3'
miRNA:   3'- -UGGUGG----UGG-UGUgUGAACa-CGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 121692 0.66 0.89475
Target:  5'- gGCCACCACgC-CGCGCU--UGCGGaaCACg -3'
miRNA:   3'- -UGGUGGUG-GuGUGUGAacACGUC--GUG- -5'
6935 5' -54.6 NC_001875.2 + 85845 0.66 0.89475
Target:  5'- ----gCACCGCGUugUUGUGguGCGCg -3'
miRNA:   3'- uggugGUGGUGUGugAACACguCGUG- -5'
6935 5' -54.6 NC_001875.2 + 40739 0.66 0.89475
Target:  5'- -aCGCUGCUGCACAUUgccaaGUGCAGC-Ca -3'
miRNA:   3'- ugGUGGUGGUGUGUGAa----CACGUCGuG- -5'
6935 5' -54.6 NC_001875.2 + 43343 0.66 0.89475
Target:  5'- cGCCGCgCACCACGUACUUGcGCuccAGuCGCu -3'
miRNA:   3'- -UGGUG-GUGGUGUGUGAACaCG---UC-GUG- -5'
6935 5' -54.6 NC_001875.2 + 47471 0.66 0.894066
Target:  5'- cGCCGCCccggcagGCCGCGCACcuac-CGGCGCa -3'
miRNA:   3'- -UGGUGG-------UGGUGUGUGaacacGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 90819 0.66 0.891998
Target:  5'- uCCACgGCCACGCGgUUGgcgaccugcuuuaGguGCGCg -3'
miRNA:   3'- uGGUGgUGGUGUGUgAACa------------CguCGUG- -5'
6935 5' -54.6 NC_001875.2 + 89713 0.66 0.887797
Target:  5'- cCCGCCAgcuaaUCACGgACaaGUGCAGCGa -3'
miRNA:   3'- uGGUGGU-----GGUGUgUGaaCACGUCGUg -5'
6935 5' -54.6 NC_001875.2 + 71680 0.66 0.887797
Target:  5'- uGCCGCCGaCACaAUGCggcGUGguGCACg -3'
miRNA:   3'- -UGGUGGUgGUG-UGUGaa-CACguCGUG- -5'
6935 5' -54.6 NC_001875.2 + 131795 0.66 0.887088
Target:  5'- cGCCGCCGCCgaguugaGCACcaACUgcguggggacgUGUGCguuuaGGCACa -3'
miRNA:   3'- -UGGUGGUGG-------UGUG--UGA-----------ACACG-----UCGUG- -5'
6935 5' -54.6 NC_001875.2 + 102046 0.66 0.885664
Target:  5'- cGCCGCCAgcgcCCGCACAgucccgcacgaucaUUUGggGCgAGCACa -3'
miRNA:   3'- -UGGUGGU----GGUGUGU--------------GAACa-CG-UCGUG- -5'
6935 5' -54.6 NC_001875.2 + 17101 0.67 0.880602
Target:  5'- aGCCGCgCGCCACugGCg---GCcGCAUa -3'
miRNA:   3'- -UGGUG-GUGGUGugUGaacaCGuCGUG- -5'
6935 5' -54.6 NC_001875.2 + 48487 0.67 0.880602
Target:  5'- -gCGCCGCCgACgACAUguguagcGUGCGGCACc -3'
miRNA:   3'- ugGUGGUGG-UG-UGUGaa-----CACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 57195 0.67 0.880602
Target:  5'- aGCCccgGCCAUgGCACGCUgccGaCAGCGCa -3'
miRNA:   3'- -UGG---UGGUGgUGUGUGAacaC-GUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 113108 0.67 0.880602
Target:  5'- cGCCuuuUCAUauuuggGCGCGCUguuguUGUGCGGCACg -3'
miRNA:   3'- -UGGu--GGUGg-----UGUGUGA-----ACACGUCGUG- -5'
6935 5' -54.6 NC_001875.2 + 87428 0.67 0.880602
Target:  5'- gACCGCC-CCACcaACUUgcaGUGCGcGCGCg -3'
miRNA:   3'- -UGGUGGuGGUGugUGAA---CACGU-CGUG- -5'
6935 5' -54.6 NC_001875.2 + 78366 0.67 0.87317
Target:  5'- uCCACCACCAUGgGCUccUGCGGgUACu -3'
miRNA:   3'- uGGUGGUGGUGUgUGAacACGUC-GUG- -5'
6935 5' -54.6 NC_001875.2 + 105606 0.67 0.87317
Target:  5'- cGCCGCagCGCCAagagcgguUGCACgUGUGguGCGCa -3'
miRNA:   3'- -UGGUG--GUGGU--------GUGUGaACACguCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.