miRNA display CGI


Results 1 - 20 of 296 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6936 3' -58.7 NC_001875.2 + 86188 0.66 0.763044
Target:  5'- aCGCGCuGUACgcaaaaCUAgagGCGCC-GCCGCAc -3'
miRNA:   3'- -GCGCGuCGUGa-----GGU---UGUGGuCGGCGU- -5'
6936 3' -58.7 NC_001875.2 + 96045 0.66 0.763044
Target:  5'- uCGCGgcaAGCGCgugcGCACCGGCaCGCAc -3'
miRNA:   3'- -GCGCg--UCGUGagguUGUGGUCG-GCGU- -5'
6936 3' -58.7 NC_001875.2 + 120222 0.66 0.763044
Target:  5'- uGCGCGcCAacccaUUCGugGCCAcGCCGCAa -3'
miRNA:   3'- gCGCGUcGUg----AGGUugUGGU-CGGCGU- -5'
6936 3' -58.7 NC_001875.2 + 118038 0.66 0.763044
Target:  5'- uGCGaCGGCAacgCC-GCGCCAcCCGCAc -3'
miRNA:   3'- gCGC-GUCGUga-GGuUGUGGUcGGCGU- -5'
6936 3' -58.7 NC_001875.2 + 83189 0.66 0.763044
Target:  5'- aCGUGUGGaaACUCCcACACCAGCgacuggcugCGCAg -3'
miRNA:   3'- -GCGCGUCg-UGAGGuUGUGGUCG---------GCGU- -5'
6936 3' -58.7 NC_001875.2 + 35977 0.66 0.763044
Target:  5'- aGCGCGGCGCUaaacuaaguaugCCGAC-CguGUgGCAg -3'
miRNA:   3'- gCGCGUCGUGA------------GGUUGuGguCGgCGU- -5'
6936 3' -58.7 NC_001875.2 + 115082 0.66 0.763044
Target:  5'- gGCGC-GCAgUCaCGACGCCGGgCUGUc -3'
miRNA:   3'- gCGCGuCGUgAG-GUUGUGGUC-GGCGu -5'
6936 3' -58.7 NC_001875.2 + 58198 0.66 0.763044
Target:  5'- cCGcCGCAGC-CgCC-GCAgCAGCCGCc -3'
miRNA:   3'- -GC-GCGUCGuGaGGuUGUgGUCGGCGu -5'
6936 3' -58.7 NC_001875.2 + 3532 0.66 0.763044
Target:  5'- uGCGCAuuuggcGCACgucaCCGGCGCCGuGgCGCGu -3'
miRNA:   3'- gCGCGU------CGUGa---GGUUGUGGU-CgGCGU- -5'
6936 3' -58.7 NC_001875.2 + 41716 0.66 0.763044
Target:  5'- uGCGCGGCGCU---GCGCgGcGUCGCAu -3'
miRNA:   3'- gCGCGUCGUGAgguUGUGgU-CGGCGU- -5'
6936 3' -58.7 NC_001875.2 + 43393 0.66 0.762093
Target:  5'- aCGCGCAcaaucuuuuccauGCGCUCguUAACGCCGG-CGUAc -3'
miRNA:   3'- -GCGCGU-------------CGUGAG--GUUGUGGUCgGCGU- -5'
6936 3' -58.7 NC_001875.2 + 41805 0.66 0.753485
Target:  5'- cCGC-CGGCACgcgcgCCGGCgccgcgGCCAGuuGCGc -3'
miRNA:   3'- -GCGcGUCGUGa----GGUUG------UGGUCggCGU- -5'
6936 3' -58.7 NC_001875.2 + 91402 0.66 0.753485
Target:  5'- gCGCcaGCGGCAgCUCgCAAUugAUgGGCCGCAg -3'
miRNA:   3'- -GCG--CGUCGU-GAG-GUUG--UGgUCGGCGU- -5'
6936 3' -58.7 NC_001875.2 + 39037 0.66 0.753485
Target:  5'- gGCGCGGCACguu-ACGCUguaAGCUGCc -3'
miRNA:   3'- gCGCGUCGUGagguUGUGG---UCGGCGu -5'
6936 3' -58.7 NC_001875.2 + 34355 0.66 0.753485
Target:  5'- gCGCGCGGCGCaagaGACGCaguugcuGCCGUAc -3'
miRNA:   3'- -GCGCGUCGUGagg-UUGUGgu-----CGGCGU- -5'
6936 3' -58.7 NC_001875.2 + 94678 0.66 0.753485
Target:  5'- gCGCGCGGCACgggugCUggAAC-CCGGCgaugCGCAc -3'
miRNA:   3'- -GCGCGUCGUGa----GG--UUGuGGUCG----GCGU- -5'
6936 3' -58.7 NC_001875.2 + 18692 0.66 0.753485
Target:  5'- gGCGC-GCGCgCCGGCgugcacauuaACguGCCGCAc -3'
miRNA:   3'- gCGCGuCGUGaGGUUG----------UGguCGGCGU- -5'
6936 3' -58.7 NC_001875.2 + 45755 0.66 0.753485
Target:  5'- -aCGCGGCGCcgagcCCGACACCgaggucgucaAGCgCGCAa -3'
miRNA:   3'- gcGCGUCGUGa----GGUUGUGG----------UCG-GCGU- -5'
6936 3' -58.7 NC_001875.2 + 58785 0.66 0.753485
Target:  5'- uGuCGCGGCGCaaaaCAGCGCCgaguuggcccAGCUGCAc -3'
miRNA:   3'- gC-GCGUCGUGag--GUUGUGG----------UCGGCGU- -5'
6936 3' -58.7 NC_001875.2 + 70388 0.66 0.753485
Target:  5'- gCGCGCcGCugUCgagguCGAUcCCGGCUGCGa -3'
miRNA:   3'- -GCGCGuCGugAG-----GUUGuGGUCGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.