miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6936 5' -51.2 NC_001875.2 + 70781 0.66 0.989792
Target:  5'- aGUGCUauuUUUAGcggUGCGU-CAGCGCc -3'
miRNA:   3'- cCGCGG---AGAUCaaaACGCAuGUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 70910 0.66 0.989792
Target:  5'- aGUGCUauuUUUAGcggUGCGU-CAGCGCc -3'
miRNA:   3'- cCGCGG---AGAUCaaaACGCAuGUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 129166 0.66 0.989792
Target:  5'- aGGCGCCgc-AGUUgccccagGCGccgcCGGCGCc -3'
miRNA:   3'- -CCGCGGagaUCAAaa-----CGCau--GUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 126957 0.66 0.989792
Target:  5'- cGGCGCgaguuaaaUAG-UUUGCGccGCAGCGUg -3'
miRNA:   3'- -CCGCGgag-----AUCaAAACGCa-UGUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 102753 0.66 0.988362
Target:  5'- cGCgGCCUUUGcacgaGCGcUGCAGCGCu -3'
miRNA:   3'- cCG-CGGAGAUcaaaaCGC-AUGUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 45466 0.66 0.988362
Target:  5'- cGGCGCCcgC-AGccgcGCGUcUAGCGCg -3'
miRNA:   3'- -CCGCGGa-GaUCaaaaCGCAuGUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 83599 0.66 0.987749
Target:  5'- cGCGCCUUauucacgGUGUuCGGCGCg -3'
miRNA:   3'- cCGCGGAGaucaaaaCGCAuGUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 36118 0.66 0.986947
Target:  5'- cGGCGCCgCUcaugcacuucGCGUuuCAGCGCg -3'
miRNA:   3'- -CCGCGGaGAucaaaa----CGCAu-GUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 35601 0.66 0.986781
Target:  5'- uGGCGCCaUCUuacGUUUugaacacaagguUGCGUuuguuGCGCa -3'
miRNA:   3'- -CCGCGG-AGAu--CAAA------------ACGCAugu--CGCG- -5'
6936 5' -51.2 NC_001875.2 + 75299 0.66 0.986781
Target:  5'- uGGCGUCggcgUUGGUgaugGCGU-CGGCGa -3'
miRNA:   3'- -CCGCGGa---GAUCAaaa-CGCAuGUCGCg -5'
6936 5' -51.2 NC_001875.2 + 75329 0.66 0.986781
Target:  5'- uGGCGUCggugUUGGUgaugGCGU-CGGCGa -3'
miRNA:   3'- -CCGCGGa---GAUCAaaa-CGCAuGUCGCg -5'
6936 5' -51.2 NC_001875.2 + 75449 0.66 0.986781
Target:  5'- uGGCGUCggcgUUGGUgaugGCGU-CGGCGa -3'
miRNA:   3'- -CCGCGGa---GAUCAaaa-CGCAuGUCGCg -5'
6936 5' -51.2 NC_001875.2 + 1036 0.66 0.986781
Target:  5'- cGGgGCC-CgAGgcgcacaGCGUugGGCGCa -3'
miRNA:   3'- -CCgCGGaGaUCaaaa---CGCAugUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 75479 0.66 0.986781
Target:  5'- uGGCGUCggcgUUGGUgaugGCGU-CGGCGa -3'
miRNA:   3'- -CCGCGGa---GAUCAaaa-CGCAuGUCGCg -5'
6936 5' -51.2 NC_001875.2 + 50373 0.66 0.985757
Target:  5'- cGCGCCaCUGaccgcggaccagcguGUacuuUUUGCGgACGGCGCa -3'
miRNA:   3'- cCGCGGaGAU---------------CA----AAACGCaUGUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 92533 0.66 0.985041
Target:  5'- -aCGCCgCcGGcacgGUGUGCAGCGCg -3'
miRNA:   3'- ccGCGGaGaUCaaaaCGCAUGUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 109088 0.66 0.985041
Target:  5'- uGUGCCggugaugugCUGGagcggUGCGUGgcCGGCGCa -3'
miRNA:   3'- cCGCGGa--------GAUCaaa--ACGCAU--GUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 82990 0.66 0.985041
Target:  5'- cGGCGCCgCUcGUcgccgGCGggcuugaaGCGGCGCc -3'
miRNA:   3'- -CCGCGGaGAuCAaaa--CGCa-------UGUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 59534 0.66 0.985041
Target:  5'- cGCGCaCUUUAac---GUGUACAGCGUg -3'
miRNA:   3'- cCGCG-GAGAUcaaaaCGCAUGUCGCG- -5'
6936 5' -51.2 NC_001875.2 + 33484 0.66 0.985041
Target:  5'- cGCGCCgcgcgCUGGgg-UGCGccaaccgauugUacacGCAGCGCg -3'
miRNA:   3'- cCGCGGa----GAUCaaaACGC-----------A----UGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.