miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6938 3' -54.1 NC_001875.2 + 39644 0.65 0.94215
Target:  5'- cGCAGCgaaccgcGCGCGAguuugggccggcgGCGCGCGGcgGCg -3'
miRNA:   3'- cCGUCGacaa---CGCGUU-------------UGCGUGCC--UG- -5'
6938 3' -54.1 NC_001875.2 + 37569 0.66 0.937795
Target:  5'- cGGCAucgaguggauGCgccgGCGCGAGCGcCGCGGcCg -3'
miRNA:   3'- -CCGU----------CGacaaCGCGUUUGC-GUGCCuG- -5'
6938 3' -54.1 NC_001875.2 + 31131 0.66 0.937795
Target:  5'- cGCAGCaaUGUgcaugcuuaacGCGCc-GCGCGCGGAg -3'
miRNA:   3'- cCGUCG--ACAa----------CGCGuuUGCGUGCCUg -5'
6938 3' -54.1 NC_001875.2 + 34609 0.66 0.937795
Target:  5'- cGGCAaaguuGCUGUUGUaaccgGCAccauGGCGCACcuGACa -3'
miRNA:   3'- -CCGU-----CGACAACG-----CGU----UUGCGUGc-CUG- -5'
6938 3' -54.1 NC_001875.2 + 126949 0.66 0.937795
Target:  5'- aGCAGCUGcgGCGCGAguuaaauaguuuGCGCcgcaGCGuGCa -3'
miRNA:   3'- cCGUCGACaaCGCGUU------------UGCG----UGCcUG- -5'
6938 3' -54.1 NC_001875.2 + 33799 0.66 0.937795
Target:  5'- aGGCGcacuuGCccGUcgGCGCAcGGCGCGCGGGg -3'
miRNA:   3'- -CCGU-----CGa-CAa-CGCGU-UUGCGUGCCUg -5'
6938 3' -54.1 NC_001875.2 + 55530 0.66 0.937795
Target:  5'- uGGCGGCUcGgaaUGCGac-GCGCaugaacACGGGCa -3'
miRNA:   3'- -CCGUCGA-Ca--ACGCguuUGCG------UGCCUG- -5'
6938 3' -54.1 NC_001875.2 + 36825 0.66 0.937795
Target:  5'- cGCGGCaGUUGCGCGccCGCGCc--- -3'
miRNA:   3'- cCGUCGaCAACGCGUuuGCGUGccug -5'
6938 3' -54.1 NC_001875.2 + 21634 0.66 0.937795
Target:  5'- cGGUucucuuGCgcGUUGC-CAAACGCcagcGCGGACg -3'
miRNA:   3'- -CCGu-----CGa-CAACGcGUUUGCG----UGCCUG- -5'
6938 3' -54.1 NC_001875.2 + 7540 0.66 0.937299
Target:  5'- -cCAGUUuaUGCGCAacgaccuGACGCcgGCGGACg -3'
miRNA:   3'- ccGUCGAcaACGCGU-------UUGCG--UGCCUG- -5'
6938 3' -54.1 NC_001875.2 + 126614 0.66 0.932718
Target:  5'- --gGGCUGgugGCGCAugucgaucGugGCGuCGGGCg -3'
miRNA:   3'- ccgUCGACaa-CGCGU--------UugCGU-GCCUG- -5'
6938 3' -54.1 NC_001875.2 + 11962 0.66 0.932718
Target:  5'- cGGCGGCgcGUUGCaaagcacugGCGAcgGCGUugGGcGCg -3'
miRNA:   3'- -CCGUCGa-CAACG---------CGUU--UGCGugCC-UG- -5'
6938 3' -54.1 NC_001875.2 + 114953 0.66 0.932718
Target:  5'- cGCGGCgccGcUGCGCGuACGCAUacaaccagGGGCg -3'
miRNA:   3'- cCGUCGa--CaACGCGUuUGCGUG--------CCUG- -5'
6938 3' -54.1 NC_001875.2 + 29793 0.66 0.932718
Target:  5'- uGCGGgaCUGUgcggGCGCuggcGGCGCAUGGGu -3'
miRNA:   3'- cCGUC--GACAa---CGCGu---UUGCGUGCCUg -5'
6938 3' -54.1 NC_001875.2 + 55316 0.66 0.932718
Target:  5'- cGGCAG-UGgcGCGCGacggugauGACGCGCcgcuucggGGGCg -3'
miRNA:   3'- -CCGUCgACaaCGCGU--------UUGCGUG--------CCUG- -5'
6938 3' -54.1 NC_001875.2 + 11664 0.66 0.932718
Target:  5'- -aCAGaUUGUUGCGCAGcUGCAaaGGACg -3'
miRNA:   3'- ccGUC-GACAACGCGUUuGCGUg-CCUG- -5'
6938 3' -54.1 NC_001875.2 + 83857 0.66 0.932197
Target:  5'- uGG-AGCUGUUugcuuuuauagacGCGCAcgGGgGCGCGGAg -3'
miRNA:   3'- -CCgUCGACAA-------------CGCGU--UUgCGUGCCUg -5'
6938 3' -54.1 NC_001875.2 + 126523 0.66 0.932197
Target:  5'- cGGCgAGCagGUagcGCGCAAuggaguggucgucGgGCGCGGGCa -3'
miRNA:   3'- -CCG-UCGa-CAa--CGCGUU-------------UgCGUGCCUG- -5'
6938 3' -54.1 NC_001875.2 + 121959 0.66 0.931672
Target:  5'- cGGCAGC-GUUGCaGCGuauucaaaaaGCugGCGGGCa -3'
miRNA:   3'- -CCGUCGaCAACG-CGUuug-------CG--UGCCUG- -5'
6938 3' -54.1 NC_001875.2 + 36541 0.66 0.931146
Target:  5'- cGGC-GCUGgcGCGCAccguccccgugugcAuaccgACGCACGcGGCg -3'
miRNA:   3'- -CCGuCGACaaCGCGU--------------U-----UGCGUGC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.